{"id":"W2127335219","doi":"10.1093/jxb/erv269","title":"Effects of<i>PHENYLALANINE AMMONIA LYASE</i>(<i>PAL</i>) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses in<i>Brachypodium</i>","year":2015,"lang":"en","type":"article","venue":"Journal of Experimental Botany","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Biological and Environmental Research; Biotechnology and Biological Sciences Research Council; Great Lakes Bioenergy Research Center; Agricultural Research Service; Office of Science; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Brachypodium distachyon; Brachypodium; Phenylpropanoid; Phenylalanine ammonia-lyase; Biology; Lignin; Cell wall; Arabidopsis; Monolignol; Expansin; Botany; Phyllosphere; Cinnamyl-alcohol dehydrogenase; Secondary cell wall; Abiotic stress; Biochemistry; Mutant; Gene; Phenylalanine; Gene expression; Biosynthesis; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001041127,0.0003715761,0.0002454673,0.0001502305,0.0001858286,0.0003180672,0.0002693849,0.0003022928,0.001208627],"category_scores_gemma":[0.00007482546,0.0002146293,0.0002702613,0.0001007473,0.0002971865,0.0001694077,0.0002306072,0.0007285609,0.0003420672],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000330721,"about_ca_system_score_gemma":0.000199719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00209667,"about_ca_topic_score_gemma":0.003097155,"domain_scores_codex":[0.9998537,0.00001211558,0.00001462777,0.00005549621,0.00003108768,0.00003282052],"domain_scores_gemma":[0.9998342,0.00002539621,0.00004948352,0.00001396765,0.00001190752,0.00006507595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005729848,0.000007660465,0.00005231439,0.0000160839,0.000003214139,0.00001889903,0.000007791778,0.00002924991,0.9995159,0.00002874814,0.00002741911,0.0002353107],"study_design_scores_gemma":[0.00003311066,0.0002744395,0.01614073,0.00000726244,0.00003896499,0.0001565031,0.0000521553,0.001949091,0.9782217,0.00005213262,0.003057895,0.00001609909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994275,0.0006393997,0.001840836,0.0001144046,0.00003921686,0.00002640105,0.001248283,0.0001798553,0.001636463],"genre_scores_gemma":[0.9924635,0.0003444683,0.001459012,0.0001514501,0.000007368228,0.0000478394,0.001233149,0.00007589744,0.004217263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00209667,"threshold_uncertainty_score":0.004168928,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007909552169533412,"score_gpt":0.2469542637396032,"score_spread":0.2390447115700698,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}