{"id":"W2127435259","doi":"10.1128/jb.187.4.1324-1333.2005","title":"Reconstitution of O-Specific Lipopolysaccharide Expression in <i>Burkholderia cenocepacia</i> Strain J2315, Which Is Associated with Transmissible Infections in Patients with Cystic Fibrosis","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Microbiology; Plasmid; Antigen; Burkholderia cenocepacia; Gene cluster; Gene; Molecular biology; Virology; Genetics; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004248739,0.0001752533,0.0006745685,0.0005853337,0.00004035542,0.00001388775,0.0001038758,0.0001538002,0.0002552418],"category_scores_gemma":[0.0003397352,0.0001239314,0.00006136171,0.0005470053,0.0001807048,0.0003932506,0.00001546019,0.0005232764,0.000002211008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003225681,"about_ca_system_score_gemma":0.0003809776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002663758,"about_ca_topic_score_gemma":0.0003675151,"domain_scores_codex":[0.9981479,0.0001792098,0.000798467,0.0002061158,0.0003333174,0.0003349795],"domain_scores_gemma":[0.9985033,0.0002363448,0.0005050621,0.0001643248,0.0004421333,0.0001488187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005728167,0.001296492,0.4523253,0.00008369795,0.00008630637,0.00003180243,0.0006214218,0.0006820264,0.5344876,0.00001435512,0.0001201564,0.004522726],"study_design_scores_gemma":[0.01056041,0.005853802,0.955418,0.002845261,0.00005334827,0.0001579162,0.0001340722,0.00007150955,0.02357428,0.000042844,0.00110346,0.0001850824],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980158,0.0002642648,0.0007749839,0.0003906969,0.0000743215,0.0003095757,0.00006085693,0.000008414327,0.0001010423],"genre_scores_gemma":[0.9951544,0.0001321385,0.004549583,0.0000322682,0.00005731892,0.000007714273,0.00003028602,0.00001738325,0.00001884765],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5109133,"threshold_uncertainty_score":0.5053774,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0119915497229552,"score_gpt":0.2586695030672367,"score_spread":0.2466779533442815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}