{"id":"W2127444913","doi":"10.1111/j.1365-2958.2006.05160.x","title":"IscR‐dependent gene expression links iron‐sulphur cluster assembly to the control of O <sub>2</sub> ‐regulated genes in <i>Escherichia coli</i>","year":2006,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":266,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Circulatory and Respiratory Health; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Operon; Promoter; Biology; Biogenesis; Gene; DNA footprinting; Gene cluster; Escherichia coli; Transcription (linguistics); Genetics; Gene expression; Transcription factor; Footprinting; Regulation of gene expression; Transcriptional regulation; Molecular biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003493977,0.0002110687,0.0002577727,0.00005207467,0.0000643702,0.00001631995,0.0003316164,0.0003302259,0.00008546442],"category_scores_gemma":[0.00001301333,0.0001554057,0.00008862848,0.0002330323,0.000115587,0.00004036979,0.0002172651,0.0002038296,0.0001727405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009526336,"about_ca_system_score_gemma":0.00001515091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003534903,"about_ca_topic_score_gemma":0.00062391,"domain_scores_codex":[0.9983515,0.0002818935,0.0004414273,0.0004316315,0.0001026171,0.000390986],"domain_scores_gemma":[0.9994141,0.00003258506,0.0001584789,0.0003228696,0.0000198797,0.00005202644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007358501,0.00009961155,0.00159789,0.000007985122,0.000006152687,0.00001020244,0.00005699463,0.01726702,0.9789786,0.000004062576,0.001472912,0.0004250312],"study_design_scores_gemma":[0.0008398655,0.00008533343,0.004074451,0.00001180147,0.00001706637,0.00001016465,0.000008039704,0.000239076,0.9903042,0.00002050022,0.004200597,0.00018892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924228,0.0003924488,0.0053828,0.0007441322,0.0001778532,0.0006496449,0.00004832421,0.00001677477,0.0001652313],"genre_scores_gemma":[0.9971303,0.00003101944,0.0005787391,0.002010924,0.00005175058,0.00002469711,0.00009768151,0.00002151959,0.00005331022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01702795,"threshold_uncertainty_score":0.6337258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002962680952105624,"score_gpt":0.1759331346281783,"score_spread":0.1729704536760727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}