{"id":"W2127455737","doi":"10.1016/j.ymben.2008.06.005","title":"Geobacter sulfurreducens strain engineered for increased rates of respiration","year":2008,"lang":"en","type":"article","venue":"Metabolic Engineering","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Geobacter sulfurreducens; Geobacter; ATP synthase; Biochemistry; Acetate kinase; Electron transport chain; Respiration; Strain (injury); Citric acid cycle; Chemistry; Phosphate; Biology; ATPase; Metabolism; Biophysics; Enzyme; Gene; Bacteria; Escherichia coli; Biofilm; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001661625,0.00010086,0.0001440405,0.0000443649,0.00003296095,0.000005564084,0.00008250137,0.00004712166,0.0001906184],"category_scores_gemma":[0.00007878011,0.00009424089,0.0000575074,0.0001550765,0.00002225541,0.0001088813,0.00002047267,0.00003842855,0.00001340961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000198921,"about_ca_system_score_gemma":0.000007436572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001279475,"about_ca_topic_score_gemma":0.00001655078,"domain_scores_codex":[0.9993782,0.000009450074,0.0001976386,0.0001373442,0.000107256,0.0001701219],"domain_scores_gemma":[0.999746,0.00003153249,0.00004725796,0.0001125724,0.00001207344,0.0000506281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000005650287,0.00002054206,0.003534029,0.00001721186,0.000006206808,4.455928e-7,0.0001534514,0.0102244,0.9851165,0.00008022478,0.0002429649,0.0005983363],"study_design_scores_gemma":[0.0005694925,0.00003413178,0.2388401,0.000009468809,0.00002277857,0.000004966903,0.000008656992,0.0163889,0.6911985,0.00001051027,0.05269256,0.0002199406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917103,0.0001048596,0.007650487,0.00003226573,0.0001401983,0.0002128953,0.00004663768,0.00003219478,0.00007012874],"genre_scores_gemma":[0.9930602,0.0000435469,0.006607287,0.0000227355,0.0001147792,0.00001647734,0.00005186835,0.00001443611,0.0000686928],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.293918,"threshold_uncertainty_score":0.3843032,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01528034941411984,"score_gpt":0.2109905340218888,"score_spread":0.195710184607769,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}