{"id":"W2127471044","doi":"10.1093/nar/28.12.2342","title":"Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria","year":2000,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Eukaryote; Pseudouridine; Euglena gracilis; Genetics; Gene; Euglena; Caulobacter crescentus; Haloferax volcanii; Transfer RNA; Genome; Archaea; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005864418,0.0001561064,0.0002311757,0.000145241,0.0001528122,0.00002637948,0.0001845409,0.0001332061,0.00001262068],"category_scores_gemma":[0.00006787532,0.0001444143,0.00002025457,0.0002368766,0.0004758751,0.000005986181,0.0002099511,0.0002214389,8.616649e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003775634,"about_ca_system_score_gemma":0.00008230389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001625352,"about_ca_topic_score_gemma":0.001414579,"domain_scores_codex":[0.9983812,0.0002491895,0.0002268109,0.0004586556,0.0002224436,0.0004617165],"domain_scores_gemma":[0.9994975,0.00002807733,0.00004650481,0.0002301817,0.0001066138,0.00009112934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003619374,0.0001006061,0.613693,0.0000415893,0.00004250371,0.00002332814,0.0009119954,0.00004821577,0.3770657,0.00001721045,0.00001112911,0.00768272],"study_design_scores_gemma":[0.001092275,0.0008400669,0.9866754,0.0001282651,0.000004997014,0.00001057093,0.0002372087,0.0001940208,0.01011444,0.0001762322,0.0003291723,0.0001973369],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953734,0.003716662,0.000002798687,0.00007635541,0.00001251289,0.0003712178,0.00006521393,0.00000271668,0.0003791233],"genre_scores_gemma":[0.9958728,0.003504507,0.0003349595,0.00001462086,0.00003214393,0.00004630462,0.00002419375,0.00002032177,0.000150171],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3729824,"threshold_uncertainty_score":0.5889044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01762349687351543,"score_gpt":0.2668652533647978,"score_spread":0.2492417564912823,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}