{"id":"W2127697422","doi":"10.1371/journal.ppat.0010032","title":"Salmonella Pathogenicity Island 2 Is Expressed Priorto Penetrating the Intestine","year":2005,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"Columbia College; BC Children's Hospital; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Pathogenicity island; Microbiology; Biology; Virulence; Salmonella; Salmonella enterica; Typhoid fever; Pathogenesis; Intestinal epithelium; Pathogen; Virulence factor; Intracellular parasite; Immune system; Bacteria; Immunology; Epithelium; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004406101,0.0002377512,0.0002771473,0.000009293198,0.0003322113,0.00005704865,0.0004525365,0.0001397465,0.0009200203],"category_scores_gemma":[0.0002990198,0.0000783146,0.0001679202,0.0002341087,0.00008900085,0.00007972922,0.0001367635,0.0002313954,0.0002285842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002329693,"about_ca_system_score_gemma":0.00001019184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005361021,"about_ca_topic_score_gemma":0.0004332919,"domain_scores_codex":[0.998156,0.0002473552,0.0004104749,0.0004734385,0.0002219446,0.0004907632],"domain_scores_gemma":[0.9987548,0.0006832659,0.000170934,0.0001745764,0.00008570233,0.0001307199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001644023,0.00009725262,0.08480121,0.000003263993,0.00001903982,0.000007720193,0.0002244708,0.000006252214,0.8904263,0.00003442115,0.00192602,0.02243754],"study_design_scores_gemma":[0.0003082658,0.0003312144,0.8897144,0.00004571208,0.00009911989,0.00007986292,0.000419533,0.002014965,0.06328975,0.0008261144,0.04221244,0.0006586398],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910884,0.0003892414,0.00001260397,0.005502701,0.00007150855,0.0002601617,0.0001549408,0.0001113461,0.002409114],"genre_scores_gemma":[0.9946216,0.00009499303,0.0003701312,0.003540813,0.000975956,0.0000364595,0.00004877883,0.000002833351,0.0003084124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8271366,"threshold_uncertainty_score":0.9999933,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03436423831777419,"score_gpt":0.2299059940168391,"score_spread":0.195541755699065,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}