{"id":"W2127697422","doi":"10.1371/journal.ppat.0010032","title":"Salmonella Pathogenicity Island 2 Is Expressed Priorto Penetrating the Intestine","year":2005,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"Columbia College; BC Children's Hospital; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Pathogenicity island; Microbiology; Biology; Virulence; Salmonella; Salmonella enterica; Typhoid fever; Pathogenesis; Intestinal epithelium; Pathogen; Virulence factor; Intracellular parasite; Immune system; Bacteria; Immunology; Epithelium; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009318715,0.0002337424,0.0001625802,0.0001894118,0.0001080103,0.0003150825,0.00009931748,0.0003528237,0.001432007],"category_scores_gemma":[0.000200853,0.0002198406,0.0001883409,0.00008545742,0.0002058197,0.0002092425,0.0002160926,0.0006447561,0.0005180076],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003301178,"about_ca_system_score_gemma":0.000162726,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000461942,"about_ca_topic_score_gemma":0.0006533437,"domain_scores_codex":[0.9998848,0.00001468649,0.000006306641,0.00002904623,0.0000268697,0.00003830967],"domain_scores_gemma":[0.9997595,0.00003109311,0.00007159677,0.00002417854,0.00003904669,0.00007454647],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000616632,0.000007030574,0.0003780571,0.00001274701,9.497404e-7,0.00006404216,0.00001104677,0.000008484737,0.9991238,0.00003747793,0.00001952993,0.0002751818],"study_design_scores_gemma":[0.00002557833,0.0007227704,0.05885548,0.00002215573,0.00001313434,0.001130825,0.0001878371,0.0006439943,0.9335558,0.0001299273,0.004703168,0.000009191395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993965,0.0009405694,0.002482283,0.0001017992,0.00002789618,0.0000204,0.0003152677,0.0000765006,0.002070396],"genre_scores_gemma":[0.9909361,0.0004348661,0.0020886,0.00007804902,0.00001488209,0.00002225439,0.0009416791,0.00002473315,0.005458869],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001432007,"threshold_uncertainty_score":0.004790545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03436423831777419,"score_gpt":0.2299059940168391,"score_spread":0.195541755699065,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}