{"id":"W2127865724","doi":"10.1128/iai.00137-15","title":"Bistable Expression of CsgD in Salmonella enterica Serovar Typhimurium Connects Virulence to Persistence","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina; University of Saskatchewan","funders":"","keywords":"Virulence; Biology; Salmonella enterica; Biofilm; Microbiology; Salmonella; Pathogen; Transcriptome; Gene; Bacteria; Serotype; Type three secretion system; Pathogenicity island; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004091769,0.00008476047,0.0001716804,0.00002315405,0.00006431428,0.00001243603,0.0000890101,0.00007327952,0.00005941186],"category_scores_gemma":[0.0002192343,0.00003898862,0.0000312513,0.0002790381,0.00005185886,0.00009604445,0.00009477873,0.0001015638,0.00001579235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002333751,"about_ca_system_score_gemma":0.000007083025,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002979431,"about_ca_topic_score_gemma":0.0003877383,"domain_scores_codex":[0.9992056,0.0002301427,0.0001833463,0.0001565177,0.00006921749,0.0001551554],"domain_scores_gemma":[0.9995598,0.0001307983,0.00006858142,0.00006188962,0.00007309035,0.0001059068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001177109,0.0001112327,0.3318669,0.000008678714,0.000002579942,0.000001072233,0.0004002838,0.00002023984,0.6619176,0.00002329352,0.0003619422,0.005168463],"study_design_scores_gemma":[0.0002189611,0.0005716017,0.9554007,0.00005306915,0.00000368919,0.00001296637,0.0007368198,0.00005606293,0.03420719,0.0002532914,0.008351905,0.0001337167],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979416,0.0001175486,0.00001693967,0.0002346052,0.0001446846,0.00009986187,0.00000521744,0.00002347019,0.00141607],"genre_scores_gemma":[0.9994864,0.0001025472,0.00004847235,0.0002541533,0.00002855832,0.000007115924,0.000007757413,5.650139e-7,0.00006443614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6277105,"threshold_uncertainty_score":0.4504028,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07453383692765372,"score_gpt":0.2587111652888586,"score_spread":0.1841773283612049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}