{"id":"W2128169528","doi":"10.1101/gr.81002","title":"Physical Maps for Genome Analysis of Serotype A and D Strains of the Fungal Pathogen <i>Cryptococcus neoformans</i>","year":2002,"lang":"en","type":"article","venue":"Genome Research","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Institutes of Health; Burroughs Wellcome Fund; Michael Smith Health Research BC; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; BC Cancer Agency; University of Oklahoma","keywords":"Biology; Contig; Genome; Synteny; Cryptococcus neoformans; Genetics; Bacterial artificial chromosome; Shotgun sequencing; Serotype; Sequence assembly; Genomics; Computational biology; Gene; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002113484,0.0003981212,0.0001890415,0.001503974,0.000534555,0.0004947018,0.0003567376,0.0003090217,0.002838141],"category_scores_gemma":[0.000483758,0.000280809,0.0008638502,0.001201514,0.0002056373,0.0001666266,0.0004327794,0.0006285788,0.0009837671],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005512228,"about_ca_system_score_gemma":0.0004691269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005588637,"about_ca_topic_score_gemma":0.005097927,"domain_scores_codex":[0.9998209,0.00003138242,0.00001900117,0.00004856805,0.00004965707,0.00003051038],"domain_scores_gemma":[0.9996513,0.0001097956,0.00007652977,0.00005103489,0.00005345881,0.00005787557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004061457,0.0001181806,0.001522802,0.0001730844,0.00002727952,0.0002014788,0.00010364,0.0002859219,0.9875887,0.0006043802,0.0003661379,0.008602251],"study_design_scores_gemma":[0.0001636075,0.001078873,0.1749411,0.0002036925,0.0003208462,0.001835243,0.0006830348,0.006321685,0.7429013,0.00097231,0.07051884,0.00005952784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8860686,0.001597388,0.07256117,0.0004533427,0.0001001046,0.0006747259,0.02498981,0.0007674483,0.01278734],"genre_scores_gemma":[0.7728581,0.001877966,0.1447151,0.000234156,0.00003592437,0.0005261023,0.07213997,0.000360552,0.007251973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005588637,"threshold_uncertainty_score":0.01111221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09838567878922078,"score_gpt":0.3617156090613967,"score_spread":0.2633299302721759,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}