{"id":"W2128210513","doi":"10.1038/ejhg.2013.272","title":"Retrieving Y chromosomal haplogroup trees using GWAS data","year":2013,"lang":"en","type":"article","venue":"European Journal of Human Genetics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Youth Innovation Promotion Association of the Chinese Academy of Sciences; Youth Innovation Promotion Association; Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Haplogroup; Genome-wide association study; Biology; Genetics; Computational biology; Evolutionary biology; Gene; Haplotype; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001130352,0.0001650914,0.0002419506,0.00007081861,0.0001615181,0.00005719439,0.0008406991,0.00006553758,0.0000993573],"category_scores_gemma":[0.0002769235,0.0001494874,0.0001032349,0.0000745474,0.0001061188,0.00001043944,0.0004628362,0.0001773745,0.0000293486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000184966,"about_ca_system_score_gemma":0.00006621138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005960879,"about_ca_topic_score_gemma":0.000008046282,"domain_scores_codex":[0.9980757,0.0005046671,0.0006870285,0.0002561196,0.0001599553,0.0003165283],"domain_scores_gemma":[0.9983492,0.00002076202,0.0005789297,0.0006540075,0.0002457399,0.0001513297],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000141221,0.0001042238,0.09481902,0.00001146558,0.0002398044,0.0000422264,0.0001226759,0.001405703,0.8698499,0.00001028351,0.02436574,0.009014791],"study_design_scores_gemma":[0.002096218,0.002866304,0.9210383,0.00009786484,0.0002592428,0.0006676971,0.0004798665,0.003031739,0.01067418,0.0002574978,0.05773387,0.0007972531],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99139,0.00220286,0.004816801,0.0001122636,0.0002407247,0.00008457994,0.00001106401,0.00000499228,0.001136697],"genre_scores_gemma":[0.9818769,0.0002895479,0.0160762,0.0001964532,0.001235529,2.993641e-7,0.00005516313,0.00004468425,0.0002252949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8591757,"threshold_uncertainty_score":0.6095918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0642762387072707,"score_gpt":0.3007771606046136,"score_spread":0.2365009218973429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}