{"id":"W2128311206","doi":"10.1093/nar/28.10.2177","title":"The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer","year":2000,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":176,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; Alberta Heritage Foundation for Medical Research","keywords":"Plasmid; Biology; ORFS; Salmonella typhi; Genetics; Transposable element; Gene; Virology; Sequence analysis; Open reading frame; Horizontal gene transfer; Genome; Peptide sequence; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002605966,0.0009012372,0.0007818595,0.001681659,0.0004220264,0.0005075454,0.0005545809,0.0005339272,0.001495837],"category_scores_gemma":[0.0008091689,0.0003293269,0.00101387,0.002092987,0.0004794821,0.0003089095,0.0003623504,0.0009462684,0.003354234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004186438,"about_ca_system_score_gemma":0.001365518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003723007,"about_ca_topic_score_gemma":0.002733095,"domain_scores_codex":[0.9997122,0.00003596949,0.00002898466,0.00006395014,0.0001037958,0.00005507199],"domain_scores_gemma":[0.9992811,0.0001699907,0.0001440788,0.00008647989,0.0001588456,0.0001595746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008231881,0.0002401419,0.002769274,0.001077991,0.00006360422,0.0008980088,0.0002879791,0.0006751677,0.9661819,0.0003952153,0.001030804,0.02555674],"study_design_scores_gemma":[0.0004866664,0.003749083,0.2831841,0.0004533069,0.001075271,0.006901628,0.0007817228,0.002766281,0.5428686,0.0009766812,0.1565346,0.0002220168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8328876,0.01238374,0.04011298,0.0005284963,0.0001670714,0.002004057,0.1028913,0.0004402444,0.008584415],"genre_scores_gemma":[0.4419109,0.01184063,0.05643016,0.0004321753,0.0001479958,0.0007985612,0.4769467,0.0003700397,0.01112277],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003723007,"threshold_uncertainty_score":0.007402658,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08942242724960138,"score_gpt":0.3239091898559106,"score_spread":0.2344867626063092,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}