{"id":"W2128312826","doi":"10.1073/pnas.1405222111","title":"Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":143,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Canadian Institute for Advanced Research","keywords":"Obligate; Diatom; Biology; Plastid; Genome; Cyanobacteria; Gene; Endosymbiosis; Evolutionary biology; Genetics; Botany; Bacteria; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008262658,0.00006980703,0.0001340991,0.00008316433,0.00005853109,0.000006616671,0.0004233684,0.00004774016,0.000003108871],"category_scores_gemma":[0.0003068075,0.00005389783,0.00003779299,0.0002759853,0.0002446631,0.000003719685,0.0001333844,0.00004216221,3.779315e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008084633,"about_ca_system_score_gemma":0.00002166119,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008892841,"about_ca_topic_score_gemma":9.887621e-7,"domain_scores_codex":[0.9991297,0.00001279505,0.0002784518,0.0001973152,0.0002693833,0.0001124211],"domain_scores_gemma":[0.9995202,0.00002664699,0.000217339,0.00001503095,0.0001867884,0.00003398102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001171956,0.00003820754,0.005511827,0.00001639303,0.000007750995,8.918601e-10,0.0001808134,0.0002769408,0.9914023,0.00238869,0.000008059776,0.0001573141],"study_design_scores_gemma":[0.0001419225,0.0001886394,0.4101712,0.0000307495,0.000007735545,0.000001963256,0.000116407,0.0003116059,0.5816453,0.005206798,0.002089044,0.00008866495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980069,0.0001185233,0.000007968986,0.0009697594,0.00001110105,0.0001610749,0.00003300594,7.202536e-7,0.000690934],"genre_scores_gemma":[0.9970228,0.00009810505,0.002629401,0.0001799408,0.00003481959,0.00001297218,5.613599e-7,0.000003662737,0.00001774142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.409757,"threshold_uncertainty_score":0.219789,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03109835663759211,"score_gpt":0.2743264375486562,"score_spread":0.2432280809110641,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}