{"id":"W2128321785","doi":"10.1101/gr.131482.111","title":"Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)","year":2012,"lang":"en","type":"article","venue":"Genome Research","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Lundbeckfonden; National Institutes of Health; Danmarks Tekniske Universitet; National Human Genome Research Institute; University of California, San Francisco; Danmarks Frie Forskningsfond; York University","keywords":"Biology; Segmented filamentous bacteria; Host (biology); Bacteria; Genetics; Computational biology; Evolutionary biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001181468,0.0002676831,0.0002222411,0.0003790005,0.0001943612,0.0002530005,0.0001575451,0.0003862055,0.0005706161],"category_scores_gemma":[0.0002167756,0.0001301849,0.0002528351,0.0002760594,0.0001385839,0.0002310718,0.0001699808,0.0002579826,0.000445864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001145867,"about_ca_system_score_gemma":0.0001174288,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004520613,"about_ca_topic_score_gemma":0.000938095,"domain_scores_codex":[0.9999287,0.000004301605,0.000005755931,0.00003200786,0.0000170559,0.00001217505],"domain_scores_gemma":[0.9998559,0.00003339519,0.0000375757,0.0000194792,0.00002624999,0.00002747042],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003243421,0.000005260454,0.002171341,0.0000260331,0.000005007884,0.00004500486,0.00001948094,0.00004182997,0.9956791,0.00005099543,0.00002919186,0.00189441],"study_design_scores_gemma":[0.00001000223,0.0002942187,0.1280798,0.00003046852,0.0001091449,0.00079856,0.0001898332,0.003952162,0.8524159,0.0004870437,0.01361188,0.00002106491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9695133,0.002366802,0.02216609,0.00009646775,0.00004210865,0.00003524546,0.004249808,0.0002036559,0.001326577],"genre_scores_gemma":[0.9442743,0.001429697,0.04487612,0.000151059,0.00001869706,0.00006886644,0.007327279,0.00008690072,0.001767087],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005706161,"threshold_uncertainty_score":0.001908958,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0904906891984306,"score_gpt":0.3643347141279015,"score_spread":0.2738440249294709,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}