{"id":"W2128411013","doi":"10.1128/jvi.00147-14","title":"Host-Specific Adaptation of HIV-1 Subtype B in the Japanese Population","year":2014,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Human leukocyte antigen; Allele; Genetics; HLA-B Antigens; Population; Clade; Allele frequency; Gene; Virology; Antigen; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004090885,0.0002454851,0.000234314,0.0004688402,0.0008239191,0.0005867816,0.0003525295,0.0002931553,0.001217562],"category_scores_gemma":[0.0007277632,0.0002236265,0.0002258373,0.0007720929,0.0003752758,0.0003348214,0.0005931937,0.0002930787,0.000185025],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002525359,"about_ca_system_score_gemma":0.0003466166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02225065,"about_ca_topic_score_gemma":0.01989412,"domain_scores_codex":[0.9996994,0.00005186232,0.00003072014,0.0001253444,0.0000336986,0.0000590387],"domain_scores_gemma":[0.9996313,0.0000293808,0.0001219828,0.00005176886,0.00006451592,0.0001010945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000102905,0.00001825407,0.9916779,0.00002351367,0.00005308377,0.0001894795,0.001111501,0.00003318316,0.002931065,0.00004458738,0.0001107896,0.003703885],"study_design_scores_gemma":[0.000005597547,0.00004494911,0.9977639,0.00000668673,0.00004093951,0.000404396,0.001023203,0.00009641686,0.0001359975,0.00002849656,0.0004443579,0.000005129162],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994061,0.00017776,0.00007963742,0.00001781803,0.000002987555,0.000004187672,0.00008098107,0.000002042937,0.000228553],"genre_scores_gemma":[0.9992054,0.0002684892,0.000124281,0.00005143281,0.000008653402,0.000006666481,0.000164015,0.000004301807,0.0001667526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02225065,"threshold_uncertainty_score":0.04424226,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02084426158236255,"score_gpt":0.2623468076123296,"score_spread":0.2415025460299671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}