{"id":"W2128498548","doi":"10.1093/molbev/msr023","title":"Pentatricopeptide Repeat Proteins Constrain Genome Evolution in Chloroplasts","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Egg Farmers of Canada","keywords":"Pentatricopeptide repeat; Biology; Indel; Genetics; Gene; RNA editing; Genome; Pseudogene; RNA; Phylogenetic tree; Gene conversion; Codon usage bias; Intron; Conserved sequence; Computational biology; Peptide sequence; Single-nucleotide polymorphism","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003798731,0.0001850603,0.0003236913,0.0006788391,0.0003673758,0.0005867195,0.0003353946,0.0006165557,0.0005447598],"category_scores_gemma":[0.0006349422,0.0003036061,0.0002969828,0.0007131957,0.000277886,0.0003858737,0.0004425463,0.0005873924,0.0002829371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004688078,"about_ca_system_score_gemma":0.0003965707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001112545,"about_ca_topic_score_gemma":0.002021349,"domain_scores_codex":[0.9997009,0.0000404984,0.00002540603,0.0001031821,0.000084539,0.00004554895],"domain_scores_gemma":[0.9994585,0.0001346218,0.000183527,0.00005984835,0.00007120892,0.00009226559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001329661,0.00002888213,0.02397932,0.00004646292,0.0000312416,0.0002236286,0.0001875458,0.001109822,0.9669735,0.0004333021,0.00002367565,0.006829676],"study_design_scores_gemma":[0.00005331049,0.0004475568,0.8688044,0.00006043706,0.0001705078,0.003510281,0.0008268597,0.0120461,0.1029486,0.001892232,0.009135166,0.0001045658],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978371,0.0003159139,0.001275314,0.00002341802,0.000002427672,0.000004553292,0.00005351034,0.0000214768,0.0004663335],"genre_scores_gemma":[0.9958877,0.0003631345,0.00303193,0.00003748905,0.000006960393,0.000007714553,0.0002873778,0.000026566,0.0003511698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001112545,"threshold_uncertainty_score":0.003401458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007575639070756311,"score_gpt":0.2295236617059419,"score_spread":0.2219480226351855,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}