{"id":"W2128606612","doi":"10.1371/journal.pgen.1002230","title":"Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea","year":2011,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":1073,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Institut National de la Recherche Agronomique; Grains Research and Development Corporation; Deutsche Forschungsgemeinschaft; Infrastructures en Biologie Santé et Agronomie; National Science Foundation; Bio-Protection Research Centre; European Commission; Broad Institute; Agence Nationale de la Recherche; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture","keywords":"Sclerotinia sclerotiorum; Biology; Botrytis cinerea; Genome; Botrytis; Mating type; Genetics; Genome evolution; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009544168,0.0001328277,0.0002410589,0.00002391809,0.0001666953,0.00001743111,0.0002684363,0.00008778796,0.0002000964],"category_scores_gemma":[0.00001001245,0.00004568508,0.0001476406,0.0005227532,0.00008636242,0.00001652994,0.0001305859,0.00007655589,0.000004521019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007782979,"about_ca_system_score_gemma":0.000006562973,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002212762,"about_ca_topic_score_gemma":0.0007367411,"domain_scores_codex":[0.9990527,0.00005757447,0.0002271436,0.0002470852,0.000179999,0.0002354944],"domain_scores_gemma":[0.9995783,0.00002717864,0.0001357642,0.0001225322,0.00005550274,0.00008072448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000009481783,0.00005622073,0.1353075,0.000004438628,0.0001251421,0.000002136739,0.00006992657,0.00001140671,0.8627533,0.00009498194,0.000007879469,0.001557593],"study_design_scores_gemma":[0.00006432424,0.0001019756,0.9308057,0.00001427573,0.000472978,0.000003621722,0.00008421444,0.0009960408,0.06711083,0.0001235977,0.00009637468,0.0001260268],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986376,0.0004270744,0.000004449728,0.00007083016,0.00006452935,0.0001822283,0.0003353075,0.00001712301,0.0002608348],"genre_scores_gemma":[0.9992423,0.0002583072,0.0002810716,0.00007573921,0.00005210059,0.000007062461,0.00001331171,0.000001530147,0.00006858466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7956425,"threshold_uncertainty_score":0.2190915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0374455374335888,"score_gpt":0.1774381271065197,"score_spread":0.1399925896729309,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}