{"id":"W2128732583","doi":"10.1186/1756-0500-5-615","title":"CooVar: Co-occurring variant analyzer","year":2012,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Annotation; Computer science; Genome project; Coding (social sciences); Computational biology; Genome; Exon; Human genome; Reference genome; Data mining; Gene; Genetics; Biology; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003657161,0.002692031,0.001293172,0.003660005,0.001097002,0.002335739,0.003576231,0.001450047,0.01406752],"category_scores_gemma":[0.01154853,0.001164188,0.002243719,0.002846479,0.0008512991,0.001831657,0.002593911,0.001904234,0.00504449],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007616589,"about_ca_system_score_gemma":0.001711338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002348777,"about_ca_topic_score_gemma":0.002519028,"domain_scores_codex":[0.9976682,0.0004208118,0.0002406182,0.001026838,0.0004790414,0.0001644861],"domain_scores_gemma":[0.992819,0.004616962,0.000877425,0.0009568888,0.0005119683,0.0002175907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.008080007,0.0005720116,0.0563016,0.004832123,0.002065354,0.00340315,0.001955766,0.02905222,0.1055437,0.02710524,0.2812207,0.4798681],"study_design_scores_gemma":[0.001277656,0.0008502593,0.02812596,0.0005059835,0.0009835678,0.005518559,0.0005842581,0.4192602,0.2462987,0.05798786,0.2378502,0.000756838],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.02976804,0.0006544302,0.4356774,0.0002410216,0.0002034126,0.0003513134,0.02785289,0.5015115,0.003739948],"genre_scores_gemma":[0.1813855,0.0005018204,0.6499012,0.0004085515,0.0001285394,0.001284294,0.0805127,0.08219981,0.003677482],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.01406752,"threshold_uncertainty_score":0.04706049,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1422339778169353,"score_gpt":0.4273276566758897,"score_spread":0.2850936788589544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}