{"id":"W2128747019","doi":"10.1128/iai.00515-10","title":"Phylogenetic Analysis of<i>Chlamydia trachomatis</i>Tarp and Correlation with Clinical Phenotype","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Chlamydia trachomatis; Phylogenetic tree; Phenotype; Phylogenetics; Virology; Pathogen; Genetics; Sequence analysis; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002760405,0.0001611639,0.000212272,0.0008850532,0.0003182461,0.0003931176,0.0001441431,0.0002970638,0.001383643],"category_scores_gemma":[0.001135567,0.00006992163,0.0002440845,0.0008379535,0.0002276981,0.0001499842,0.0002315691,0.000357045,0.0003051124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001507636,"about_ca_system_score_gemma":0.0001506682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001924949,"about_ca_topic_score_gemma":0.001310153,"domain_scores_codex":[0.9997011,0.00006180684,0.00003048846,0.0000740326,0.00005519714,0.00007739196],"domain_scores_gemma":[0.9993021,0.0002098282,0.0001845858,0.00003295109,0.000134318,0.0001361158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008914956,0.0001670482,0.7793147,0.0001400907,0.00009751927,0.001383171,0.0004646276,0.0004281085,0.2007654,0.0001929377,0.0005829995,0.01557188],"study_design_scores_gemma":[0.000007889987,0.0003178881,0.9877918,0.00001794774,0.00004233458,0.003023529,0.000456123,0.00112381,0.005853903,0.00006168381,0.001293075,0.000009873089],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982803,0.0001872107,0.0003529806,0.00005547831,0.000005600337,0.00001257024,0.0005135852,0.000007966504,0.0005843337],"genre_scores_gemma":[0.9978109,0.00009396485,0.0007560862,0.00003140523,0.000006526448,0.000008423811,0.001115207,0.000006001138,0.0001714791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001924949,"threshold_uncertainty_score":0.004628718,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01927932679483437,"score_gpt":0.3168022908525355,"score_spread":0.2975229640577012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}