{"id":"W2128747019","doi":"10.1128/iai.00515-10","title":"Phylogenetic Analysis of<i>Chlamydia trachomatis</i>Tarp and Correlation with Clinical Phenotype","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Chlamydia trachomatis; Phylogenetic tree; Phenotype; Phylogenetics; Virology; Pathogen; Genetics; Sequence analysis; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007133026,0.0001036495,0.000271579,0.0003268039,0.0002319639,0.00001743472,0.00004464651,0.0002065899,0.0003400077],"category_scores_gemma":[0.0003186357,0.00008466918,0.00006242857,0.0005518778,0.000589208,0.0001169062,0.00003801112,0.0007430176,0.00002309499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007638562,"about_ca_system_score_gemma":0.00003427042,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001402593,"about_ca_topic_score_gemma":0.0009654548,"domain_scores_codex":[0.9989918,0.0003524483,0.0002752912,0.0002178875,0.00003392909,0.0001286681],"domain_scores_gemma":[0.9990176,0.000327964,0.0001289596,0.0003129078,0.0001867779,0.00002577913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009152817,0.0002160357,0.8466275,0.000008471041,0.0007232733,1.855585e-7,0.0001573023,0.0000312005,0.1180612,0.0002551218,0.00001584266,0.03381231],"study_design_scores_gemma":[0.0005664748,0.000216721,0.9927303,0.000004287966,0.0004126667,0.0000357537,0.00003138863,0.0001072186,0.004622074,0.00006362136,0.001118394,0.00009115697],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967327,0.0002414817,0.001088551,0.00002359472,0.0003398494,0.0001745288,0.000008514814,0.00003443715,0.001356381],"genre_scores_gemma":[0.9993749,0.0002394763,0.00009885081,0.00001234216,0.00001903953,0.0000101991,0.000042478,0.000007201897,0.0001954815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1461027,"threshold_uncertainty_score":0.3722847,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01927932679483437,"score_gpt":0.3168022908525355,"score_spread":0.2975229640577012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}