{"id":"W2128769815","doi":"10.1038/nature11234","title":"Structure, function and diversity of the healthy human microbiome","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11935,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Guelph","funders":"Los Alamos National Laboratory; U.S. National Library of Medicine; Division of Biological Infrastructure; Crohn's and Colitis Foundation; National Institute of General Medical Sciences; National Cancer Institute; National Human Genome Research Institute; Defense Threat Reduction Agency; National Institute of Dental and Craniofacial Research; Gordon and Betty Moore Foundation; Crohn's and Colitis Foundation of Canada; Vlaamse regering; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; Office of Science; Horace H. Rackham School of Graduate Studies, University of Michigan; Army Research Office; Fonds Wetenschappelijk Onderzoek; Gladstone Institutes; Howard Hughes Medical Institute; U.S. Department of Energy; Rice University; National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Science Foundation","keywords":"Microbiome; Metagenomics; Biology; Ecology; Human Microbiome Project; Niche; Human microbiome; Community; Population; Habitat; Microbial ecology; Evolutionary biology; Genetics; Medicine; Environmental health; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009396215,0.0002097479,0.0004331537,0.001264423,0.0005597512,0.001774111,0.0002219698,0.0005474681,0.001074982],"category_scores_gemma":[0.003094465,0.000215393,0.0002325245,0.0009112886,0.0009695067,0.001072117,0.001102825,0.0004713972,0.0004544231],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003329729,"about_ca_system_score_gemma":0.0004935215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001695993,"about_ca_topic_score_gemma":0.001123232,"domain_scores_codex":[0.9989524,0.0003029487,0.00005513992,0.0003185955,0.0002257961,0.0001451075],"domain_scores_gemma":[0.99903,0.0002058671,0.0002570216,0.0001398915,0.0002069434,0.0001602244],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008036727,0.0001399954,0.5645813,0.001082666,0.0004014631,0.0005455286,0.004612062,0.002183234,0.1265089,0.01102187,0.005155554,0.2829638],"study_design_scores_gemma":[0.00002029295,0.0003447504,0.9502635,0.0002282887,0.00007527446,0.001470982,0.001703801,0.001726915,0.004473103,0.01902182,0.02061324,0.00005792049],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9451264,0.02854755,0.01105331,0.002246261,0.000150216,0.000061863,0.003001459,0.0001187567,0.009694327],"genre_scores_gemma":[0.9919283,0.003504964,0.00297893,0.0002825848,0.00008811124,0.00002969516,0.0006541577,0.0000182675,0.0005149146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001774111,"threshold_uncertainty_score":0.004969239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006397973022572632,"score_gpt":0.2491171239681573,"score_spread":0.2427191509455847,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}