{"id":"W2128858630","doi":"10.1074/mcp.m112.026161","title":"Global Impact of Salmonella Pathogenicity Island 2-secreted Effectors on the Host Phosphoproteome","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Pathogenicity island; Cell biology; Actin cytoskeleton; Salmonella; Virulence; Secretion; Type three secretion system; Kinase; Phosphorylation; Cytoskeleton; Genetics; Cell; Bacteria; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005246048,0.0003684345,0.0004595788,0.00001362103,0.0001531746,0.00006296857,0.0006001136,0.0002807197,0.000731013],"category_scores_gemma":[0.0002217991,0.0001262046,0.0005565304,0.0004785664,0.0001717227,0.00005463646,0.0001478762,0.0002383047,0.000147829],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000994883,"about_ca_system_score_gemma":0.00002423752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002518865,"about_ca_topic_score_gemma":0.00005152397,"domain_scores_codex":[0.9976619,0.0005529767,0.0004381548,0.0004944508,0.0002866273,0.0005658832],"domain_scores_gemma":[0.9988977,0.0002360737,0.000284442,0.000286552,0.0001225435,0.0001727419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006939207,0.00007944531,0.0372313,0.000006717033,0.00007353273,0.00001405108,0.00001908109,0.00006180501,0.9610249,0.0001955536,0.0001775467,0.001046654],"study_design_scores_gemma":[0.0002452639,0.0009692903,0.311537,0.0000250393,0.00003015429,0.00001512297,0.00003664762,0.0004786699,0.6844485,0.001795537,0.00008838333,0.0003303785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965095,0.0002527616,0.0002379184,0.0004081515,0.00009220228,0.001814018,0.0001233405,0.00005279464,0.0005093321],"genre_scores_gemma":[0.9991901,0.00002033318,0.0001181737,0.0003149801,0.00008792795,0.000150843,0.00008242299,0.000004547475,0.00003066929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2765765,"threshold_uncertainty_score":0.800408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009000082768306156,"score_gpt":0.2100770636739135,"score_spread":0.2010769809056073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}