{"id":"W2128996483","doi":"10.1186/gb-2014-15-6-r77","title":"Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea","year":2014,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":516,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Saskatchewan Research Council (Canada); Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; Australian Research Council; Agriculture and Agri-Food Canada; Directorate for Biological Sciences; Queensland Cyber Infrastructure Foundation; National Science Foundation; University of Georgia; University of Missouri; Genome Alberta; Department for Environment, Food and Rural Affairs, UK Government","keywords":"Biology; Brassica oleracea; Transcriptome; Genome; Human genetics; Dominance (genetics); Genetics; Evolutionary biology; Computational biology; Gene; Botany; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007592568,0.0001857053,0.0001622454,0.0004147093,0.000210834,0.0002377926,0.0001385208,0.0002546684,0.0008438946],"category_scores_gemma":[0.0001377529,0.0001310477,0.0002228632,0.000274491,0.0001153689,0.0001303187,0.0002149841,0.0002354872,0.0003759731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002176818,"about_ca_system_score_gemma":0.0001094915,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002357293,"about_ca_topic_score_gemma":0.004904272,"domain_scores_codex":[0.99993,0.000004028399,0.000003621276,0.00003226472,0.00001593293,0.00001416137],"domain_scores_gemma":[0.9998759,0.00002701651,0.00003270118,0.00002021044,0.00002115735,0.00002294804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004719477,0.000002518112,0.001158451,0.000008625861,0.000003308067,0.00001752479,0.00002813139,0.00002773572,0.9980145,0.00001087771,0.00001009098,0.0006710551],"study_design_scores_gemma":[0.00001964196,0.0003238229,0.4827044,0.00001938422,0.00008670013,0.0005594027,0.0003197365,0.002506924,0.5087029,0.000229079,0.004503113,0.00002482179],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933324,0.0004108246,0.002455452,0.00004632403,0.000004432205,0.00001024426,0.002807579,0.0001440671,0.000788649],"genre_scores_gemma":[0.9911519,0.0002154149,0.00202071,0.00005921,0.000003785104,0.00001993059,0.004719038,0.0000528947,0.001757121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002357293,"threshold_uncertainty_score":0.00468719,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01727704787521558,"score_gpt":0.2319260366991218,"score_spread":0.2146489888239062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}