{"id":"W2128996483","doi":"10.1186/gb-2014-15-6-r77","title":"Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea","year":2014,"lang":"en","type":"article","venue":"Genome biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":516,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Saskatchewan Research Council (Canada); Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; Australian Research Council; Agriculture and Agri-Food Canada; Directorate for Biological Sciences; Queensland Cyber Infrastructure Foundation; National Science Foundation; University of Georgia; University of Missouri; Genome Alberta; Department for Environment, Food and Rural Affairs, UK Government","keywords":"Biology; Brassica oleracea; Transcriptome; Genome; Human genetics; Dominance (genetics); Genetics; Evolutionary biology; Computational biology; Gene; Botany; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006116268,0.0001129171,0.0002450011,0.00001842043,0.000101568,0.00001373883,0.0002763956,0.0001117411,0.00005286043],"category_scores_gemma":[0.00006786609,0.00004017322,0.00005352884,0.0002761214,0.0001085991,0.00002920342,0.00003451675,0.0001058892,0.000007422418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008639041,"about_ca_system_score_gemma":0.000006284318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007864986,"about_ca_topic_score_gemma":0.0001374683,"domain_scores_codex":[0.9988769,0.0002505763,0.0003015951,0.0002624331,0.00006770543,0.0002408261],"domain_scores_gemma":[0.9994376,0.0002996313,0.0001016632,0.00008594451,0.00003574007,0.00003947033],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001107298,0.00003244562,0.005929243,0.000006094506,0.000004852138,3.491614e-7,0.000348835,0.000003344885,0.98309,0.007823464,0.000001752467,0.002748521],"study_design_scores_gemma":[0.000292758,0.0005483069,0.9538989,0.000008197846,0.00001698056,0.00001497563,0.0002339611,0.00003052129,0.004943374,0.008535488,0.03128254,0.0001939674],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950404,0.001521325,0.00003078191,0.002438539,0.00005858948,0.0002406043,0.00006195872,0.00001185514,0.0005959225],"genre_scores_gemma":[0.9987078,0.0002261723,0.0004055814,0.0003587079,0.0001655217,0.00002756383,0.00004728302,9.244536e-7,0.00006046139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9781467,"threshold_uncertainty_score":0.1638216,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01727704787521558,"score_gpt":0.2319260366991218,"score_spread":0.2146489888239062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}