{"id":"W2129020917","doi":"10.1089/fpd.2014.1860","title":"Multilocus Sequence Typing and Virulence Gene Profiles Associated with <i>Escherichia coli</i> from Human and Animal Sources","year":2015,"lang":"en","type":"article","venue":"Foodborne Pathogens and Disease","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; National Research Council Canada; McGill University Health Centre; St. Clair College; Université de Montréal; University of Guelph; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Virulence; Multilocus sequence typing; Biology; Escherichia coli; Gene; Genetics; Pathogenic Escherichia coli; Typing; Microbiology; Sequence analysis; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002251946,0.0001739855,0.0002219869,0.0009073763,0.0003095129,0.0004983537,0.0001547218,0.0001862741,0.0007038644],"category_scores_gemma":[0.0007471823,0.0001173338,0.0001314919,0.001026551,0.0002866496,0.0001353645,0.0002245653,0.000181478,0.000141112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007253198,"about_ca_system_score_gemma":0.0009663362,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1039832,"about_ca_topic_score_gemma":0.1550776,"domain_scores_codex":[0.9997281,0.00002662086,0.00001730745,0.00006254968,0.00008153007,0.00008388235],"domain_scores_gemma":[0.9995342,0.00004151372,0.000158434,0.00002208059,0.0001588949,0.00008471035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002070682,0.00003082935,0.9722381,0.00004222707,0.00002996256,0.0002119951,0.00043593,0.0000720024,0.0212764,0.0000481733,0.0001374647,0.005269866],"study_design_scores_gemma":[0.000002428013,0.00007238496,0.9961462,0.000009177693,0.00001762388,0.0004195003,0.0005413559,0.00007984421,0.002176274,0.00001699959,0.0005142419,0.000004004645],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992846,0.00009796368,0.0001203761,0.00001761928,0.000001045175,0.000004972184,0.0002551962,0.000001504343,0.0002166346],"genre_scores_gemma":[0.9987164,0.0001362113,0.000266999,0.00002839714,0.000002997424,0.000002380393,0.0006544761,0.0000020847,0.0001901531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1039832,"threshold_uncertainty_score":0.2067558,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03056132251445364,"score_gpt":0.2687938854154764,"score_spread":0.2382325629010228,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}