{"id":"W2129229719","doi":"10.1093/molbev/msp176","title":"Reconciling Ecological and Genomic Divergence among Lineages of Listeria under an \"Extended Mosaic Genome Concept\"","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Biology; Genome; Evolutionary biology; Gene; Natural selection; Genome evolution; Ecological niche; Niche; Lineage (genetic); Genetics; Divergence (linguistics); Selection (genetic algorithm); Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001111455,0.0001277208,0.0002609245,0.0007204823,0.0003018556,0.0006775648,0.0004888794,0.0003462284,0.0003369684],"category_scores_gemma":[0.001949282,0.0001186077,0.0001789384,0.0004616529,0.000949081,0.00113487,0.001240908,0.0003556242,0.00003061238],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004041662,"about_ca_system_score_gemma":0.0003181178,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002764482,"about_ca_topic_score_gemma":0.000474143,"domain_scores_codex":[0.9996331,0.0001271703,0.00002075334,0.00007267354,0.0000963613,0.00004993684],"domain_scores_gemma":[0.9992911,0.0002459349,0.0002132162,0.00008903317,0.00007338014,0.00008738242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001321079,0.00008477664,0.2801806,0.0003330929,0.0002153801,0.001550209,0.003190282,0.007418089,0.5856937,0.04326149,0.0001408959,0.07661049],"study_design_scores_gemma":[0.0001116503,0.001182192,0.7588961,0.0001495944,0.0003291222,0.005314332,0.005511724,0.0558577,0.04779807,0.1172077,0.007540263,0.000101517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960598,0.0003592775,0.003168505,0.0000585427,0.000002217144,0.000002838143,0.00001074012,0.000008304934,0.0003296998],"genre_scores_gemma":[0.9974357,0.0001230814,0.002306298,0.00004133583,0.000004982309,0.000003464273,0.00003430926,0.00000347798,0.00004729839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001111455,"threshold_uncertainty_score":0.005878031,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02678557579804223,"score_gpt":0.3059217546913556,"score_spread":0.2791361788933133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}