{"id":"W2129324711","doi":"10.1534/genetics.105.047399","title":"Evolutionary Rates and Expression Level in Chlamydomonas","year":2005,"lang":"en","type":"article","venue":"Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Nonsynonymous substitution; Biology; Gene; Genetics; Codon usage bias; Chlamydomonas reinhardtii; Synonymous substitution; Chlamydomonas; Polyploid; Natural selection; GC-content; Molecular evolution; Evolutionary biology; Ploidy; Phylogenetics; Selection (genetic algorithm); Genome; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006381421,0.0001057407,0.00008613062,0.00003017861,0.00005209317,0.000008711671,0.00008021243,0.00008240595,0.000006652692],"category_scores_gemma":[0.00001678586,0.0001032819,0.00002335996,0.00003693224,0.00005821612,4.705288e-7,0.0001512614,0.00004181814,0.000005476315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007867067,"about_ca_system_score_gemma":0.00002499126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005167844,"about_ca_topic_score_gemma":0.0001088217,"domain_scores_codex":[0.9993836,0.00002177957,0.0001364416,0.0002283248,0.00005863784,0.0001711934],"domain_scores_gemma":[0.9997274,0.00000827142,0.00002833428,0.0001627144,0.00002872988,0.00004459022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002220123,0.00003412193,0.05973344,0.000005646295,0.00001008901,0.000001009659,0.00006635154,0.0005198003,0.9309942,0.00002529549,0.001708976,0.006878847],"study_design_scores_gemma":[0.0007776997,0.0001263039,0.4790858,0.00001150684,0.000007394677,0.00001643532,0.0000878784,0.0003331443,0.4185624,0.0003076239,0.1004251,0.00025866],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861432,0.01291523,0.0001353489,0.0002145932,0.00005211548,0.00009789315,0.00001726273,0.000001837868,0.0004224984],"genre_scores_gemma":[0.9861801,0.002062214,0.0110365,0.0001607887,0.0002262263,0.00001362921,0.00001531553,0.00001251631,0.0002927138],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5124318,"threshold_uncertainty_score":0.4211712,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01959178649895018,"score_gpt":0.2529727420405852,"score_spread":0.233380955541635,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}