{"id":"W2129513008","doi":"10.1099/mic.0.28486-0","title":"Frequent recombination and low level of clonality within Salmonella enterica subspecies I","year":2006,"lang":"en","type":"article","venue":"Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of New South Wales; University of Calgary","keywords":"Subspecies; Salmonella enterica; Biology; Phylogenetic tree; Housekeeping gene; Genetics; Salmonella; Gene; Phylogenetics; Population; Serotype; Microbiology; Escherichia coli; Zoology; Bacteria; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004163871,0.0001509763,0.0002906071,0.0009894845,0.0003787812,0.0004870047,0.0002301516,0.0003452511,0.0004616354],"category_scores_gemma":[0.001832171,0.0001849418,0.0001736113,0.0005167284,0.0004567713,0.0002237617,0.0003965397,0.0002920988,0.00009916323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000217883,"about_ca_system_score_gemma":0.000158628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001308745,"about_ca_topic_score_gemma":0.001839382,"domain_scores_codex":[0.9995756,0.00007262058,0.00003284633,0.000149316,0.00008346732,0.00008617873],"domain_scores_gemma":[0.9985738,0.0003992082,0.0004979733,0.0001682273,0.0001896728,0.0001711984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005170632,0.0000726619,0.7098926,0.00005744522,0.0001375399,0.0002128166,0.001269353,0.0004862346,0.2743547,0.0002265887,0.00005583425,0.01271707],"study_design_scores_gemma":[0.000009002514,0.0002578732,0.9884506,0.000008234129,0.00005175384,0.0007045333,0.0004642595,0.001020725,0.008527532,0.0001707792,0.0003224968,0.00001215654],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996092,0.00005108532,0.0001983063,0.000003800546,3.609377e-7,0.000001919217,0.00001977513,0.000002580378,0.0001131295],"genre_scores_gemma":[0.9995517,0.0000244451,0.0002683273,0.000004698761,0.000001651018,0.000002312572,0.0001024583,0.000001791064,0.00004253351],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001308745,"threshold_uncertainty_score":0.00260222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04977115503972706,"score_gpt":0.2283714615984335,"score_spread":0.1786003065587065,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}