{"id":"W2129600735","doi":"10.1016/j.jprot.2014.07.005","title":"Compositional complexity of the mitochondrial proteome of a unicellular eukaryote (Acanthamoeba castellanii, supergroup Amoebozoa) rivals that of animals, fungi, and plants","year":2014,"lang":"en","type":"article","venue":"Journal of Proteomics","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Tula Foundation; Canadian Institutes of Health Research; Killam Trusts; Fistula Foundation","keywords":"Biology; Proteome; Eukaryote; Mitochondrial DNA; Mitochondrion; Genetics; Ribosomal protein; Glyoxylate cycle; Genome; Cell biology; Gene; RNA; Ribosome; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003936318,0.0001375646,0.0003797763,0.00005433593,0.0000640789,0.000008426173,0.000394381,0.0001469366,0.00001395176],"category_scores_gemma":[0.00005008154,0.0001071675,0.0001876573,0.00005545967,0.0004308921,0.000008780848,0.000211586,0.000169221,2.751457e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001232231,"about_ca_system_score_gemma":0.0001109075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004335729,"about_ca_topic_score_gemma":0.00001515302,"domain_scores_codex":[0.9987751,0.0001963876,0.0004551268,0.0001399731,0.0002900902,0.0001433545],"domain_scores_gemma":[0.9986494,0.00003018741,0.000803919,0.0002344783,0.0002092664,0.00007272573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009804507,0.0001010422,0.02826891,0.0001317566,0.0001359857,0.000002516716,0.00009548051,0.00004321932,0.9696495,0.0004301479,0.00007398926,0.00008701775],"study_design_scores_gemma":[0.00131539,0.0007633015,0.05871094,0.0001317897,0.00005655472,0.0001464332,0.00005312614,0.00005718615,0.937448,0.0009878008,0.0002205118,0.0001089298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963371,0.000502452,0.002224862,0.00009132324,0.0001578613,0.0003529594,0.0002413273,0.000001018985,0.00009107945],"genre_scores_gemma":[0.9906338,0.0001029281,0.009024361,0.0000227706,0.0001728303,0.000001645203,0.00001155985,0.000009640652,0.00002039444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03220145,"threshold_uncertainty_score":0.4370163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02125914580614285,"score_gpt":0.2154093349974668,"score_spread":0.194150189191324,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}