{"id":"W2129627219","doi":"10.1128/iai.68.12.6840-6847.2000","title":"DNA Sequence and Comparison of Virulence Plasmids from <i>Rhodococcus equi</i> ATCC 33701 and 103","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Washington State University; Grayson-Jockey Club Research Foundation","keywords":"Biology; ORFS; Plasmid; Virulence; Genetics; Rhodococcus equi; Gene; Pathogenicity island; Homology (biology); Open reading frame; Gene cluster; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009467496,0.0001336053,0.0002768758,0.00005216826,0.0001809009,0.00002516812,0.00001274011,0.00007678433,0.0003123954],"category_scores_gemma":[0.00003387275,0.0001141624,0.0000364501,0.00008687404,0.0002050295,0.0001286449,0.00002743347,0.0001493127,0.000006687101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003094966,"about_ca_system_score_gemma":0.00003527492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005823026,"about_ca_topic_score_gemma":0.00006880565,"domain_scores_codex":[0.9993095,0.00006038197,0.0002310938,0.000176865,0.0001015197,0.0001206178],"domain_scores_gemma":[0.9994833,0.00006641249,0.0000860181,0.0001775272,0.00005736381,0.000129374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001781073,0.0003942856,0.9216319,0.00008062994,0.0001167354,0.00002722117,0.0003703213,0.000002637577,0.01015648,0.00003139789,0.00005512035,0.0669552],"study_design_scores_gemma":[0.001977125,0.0005661251,0.977083,0.0001748668,0.0002579094,0.0003088694,0.00007313603,0.0003655683,0.01487875,0.0002914722,0.003864655,0.0001585481],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994377,0.000777559,0.00001573801,0.00003465072,0.00006697136,0.0001954545,0.000031139,0.00004633353,0.00445515],"genre_scores_gemma":[0.9981412,0.001524803,0.0000353684,0.0001225214,0.00002425454,0.000009105081,0.00003459086,0.000008521166,0.000099654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06679665,"threshold_uncertainty_score":0.8802713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03488796415828281,"score_gpt":0.3263621066417988,"score_spread":0.2914741424835159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}