{"id":"W2129682738","doi":"10.1080/10635150601052637","title":"Phylogenomic Analysis of the L1 Retrotransposons in Deuterostomia","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Joint Genome Institute; Macquarie University; U.S. Department of Energy","keywords":"Retrotransposon; Biology; Genome; Evolutionary biology; Lineage (genetic); Genome evolution; Genetics; Transposable element; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001805057,0.00006622317,0.0003106764,0.00002420637,0.00004577349,0.000006310187,0.0002135868,0.00007785246,0.00006922477],"category_scores_gemma":[0.00002179172,0.00001904363,0.000163985,0.0007396034,0.00004905829,0.000008034332,0.00003362557,0.00004174928,0.000004474744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001604513,"about_ca_system_score_gemma":0.000004822075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008538222,"about_ca_topic_score_gemma":0.008545161,"domain_scores_codex":[0.9991334,0.0002047226,0.0003594293,0.0001335128,0.0000473785,0.0001215243],"domain_scores_gemma":[0.9996086,0.0001339209,0.0001382521,0.00008292746,0.00002403544,0.00001222764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000002402252,0.00003822273,0.5417604,0.0001539067,0.00007972457,2.212565e-7,0.00005950673,0.0001883241,0.4541699,0.003510898,0.000001544197,0.00003494043],"study_design_scores_gemma":[0.00005508255,0.00002668189,0.9957798,0.0000823006,0.0001583176,0.000001170396,0.0000386231,0.0005401869,0.001287029,0.001972011,0.000008756512,0.00005008165],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988374,0.0001707983,0.00001433386,0.0003435029,0.00006335235,0.0002916106,0.00006298118,0.000007719691,0.0002083325],"genre_scores_gemma":[0.9998337,0.000001264455,0.00003358049,0.00002945433,0.00002612445,0.00002749026,0.00002285191,2.508385e-7,0.00002525077],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4540193,"threshold_uncertainty_score":0.47684,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009253429812932002,"score_gpt":0.1970273546481053,"score_spread":0.1877739248351733,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}