{"id":"W2129682738","doi":"10.1080/10635150601052637","title":"Phylogenomic Analysis of the L1 Retrotransposons in Deuterostomia","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Joint Genome Institute; Macquarie University; U.S. Department of Energy","keywords":"Retrotransposon; Biology; Genome; Evolutionary biology; Lineage (genetic); Genome evolution; Genetics; Transposable element; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008611554,0.0001995692,0.0002215889,0.001340463,0.0002454537,0.0003198927,0.0001278845,0.0001931207,0.0005771148],"category_scores_gemma":[0.000214201,0.0001165089,0.0002689032,0.001005995,0.0001704931,0.0001602057,0.0002434055,0.0002182109,0.000256026],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002088536,"about_ca_system_score_gemma":0.0002053818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001211189,"about_ca_topic_score_gemma":0.001527156,"domain_scores_codex":[0.9999151,0.000007768708,0.00000688666,0.00003819169,0.00001693941,0.00001502067],"domain_scores_gemma":[0.9997774,0.00005007491,0.00008079943,0.00001243255,0.00002860661,0.00005071647],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000303542,0.00002651478,0.04038505,0.0001205728,0.00003939772,0.000227226,0.0002881043,0.0002493465,0.949263,0.0001186508,0.00005472086,0.008923936],"study_design_scores_gemma":[0.00001255043,0.0001564123,0.9557732,0.00001943645,0.00008858425,0.0007688697,0.0004165341,0.001636703,0.0389111,0.0001239952,0.002077516,0.00001507787],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975356,0.0003921142,0.0005150312,0.00002277638,0.000001397645,0.000008073023,0.001156084,0.00001138681,0.0003575071],"genre_scores_gemma":[0.9919991,0.00045305,0.002054659,0.00004583889,0.000003212026,0.00002169387,0.004767017,0.00001617523,0.0006393116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001340463,"threshold_uncertainty_score":0.002408206,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009253429812932002,"score_gpt":0.1970273546481053,"score_spread":0.1877739248351733,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}