{"id":"W2129957090","doi":"10.1046/j.1365-294x.2001.01244.x","title":"A microbial population–species interface: nested cladistic and coalescent inference with multilocus data","year":2001,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Coalescent theory; Biology; Evolutionary biology; Maximum parsimony; Cladistics; Population; Phylogeography; Most recent common ancestor; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007048663,0.0001126695,0.0001529719,0.00001085816,0.0001180754,0.00004000348,0.0002207747,0.00008152223,0.0001134314],"category_scores_gemma":[0.00003656962,0.00004405022,0.00001415475,0.0001122123,0.00006382572,0.000045595,0.0001471073,0.00007567176,0.000009732256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001522622,"about_ca_system_score_gemma":0.000005773754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007215614,"about_ca_topic_score_gemma":0.01091017,"domain_scores_codex":[0.9992045,0.00006295003,0.0001235124,0.0003228995,0.00007037954,0.0002157721],"domain_scores_gemma":[0.9996954,0.00006010798,0.00005589906,0.00009630608,0.00002915465,0.00006313538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009522363,0.0000838216,0.07229801,0.000007001203,0.00001751391,0.0002690076,0.00001695495,0.00003077105,0.9224471,0.0004853729,0.00009122292,0.004157954],"study_design_scores_gemma":[0.0004170375,0.0004352972,0.9773514,0.00003624449,0.00004256474,0.0002858175,0.0001174955,0.001008945,0.003419386,0.0002710379,0.01629366,0.0003210754],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982501,0.0001305333,0.0005258989,0.000583548,0.0000692734,0.00016402,0.0001363654,0.00003069058,0.000109598],"genre_scores_gemma":[0.9987859,0.00005413681,0.0003398546,0.000174996,0.00003183133,0.000005430957,0.000356312,0.000001015451,0.000250526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9190277,"threshold_uncertainty_score":0.608813,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02289321339421135,"score_gpt":0.2304018173023756,"score_spread":0.2075086039081643,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}