{"id":"W2130468058","doi":"10.1128/aem.71.9.5182-5191.2005","title":"Phylogenetic Characterization of Virulence and Resistance Phenotypes of <i>Pseudomonas syringae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":297,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Virulence; Multilocus sequence typing; Microbiology; Pseudomonas syringae; Antibiotic resistance; Phylogenetics; Horizontal gene transfer; Genetics; Pathogen; Gene; Antibiotics; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004370636,0.00008207663,0.0001551259,0.000004815554,0.00004349199,0.000002097546,0.00005452503,0.00005161938,0.00002778173],"category_scores_gemma":[0.000001185728,0.00003968031,0.00001327195,0.0000242789,0.0002305655,0.00001881111,0.00007766452,0.00002727312,0.000002650433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005065251,"about_ca_system_score_gemma":7.061967e-7,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003118419,"about_ca_topic_score_gemma":0.00002219207,"domain_scores_codex":[0.9995488,0.00001555418,0.0001462194,0.0001679362,0.00001927442,0.0001022029],"domain_scores_gemma":[0.9998244,0.00003728867,0.00009107737,0.0000268101,0.000001630878,0.00001879329],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002708516,0.00002981325,0.004692072,0.00000814409,0.00000882456,1.2395e-7,0.00005589316,1.140857e-7,0.9853245,0.00009741024,0.000002865066,0.009753134],"study_design_scores_gemma":[0.0001326281,0.00005344172,0.4158802,0.000009121873,0.00001234567,0.00001004164,0.00006652845,7.641255e-7,0.5797606,0.0000449192,0.003934653,0.00009475949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988146,0.0005054586,0.000001611312,0.00007420557,0.00001171459,0.00008653799,0.0003710543,0.000004790202,0.0001300716],"genre_scores_gemma":[0.9983672,0.001164111,0.0002084967,0.0000656062,0.0000264114,0.000005124034,0.0001372519,6.388068e-7,0.00002518055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4111881,"threshold_uncertainty_score":0.1618116,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004361806912671298,"score_gpt":0.1456845647641066,"score_spread":0.1413227578514353,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}