{"id":"W2130539218","doi":"10.1016/j.ijid.2014.03.1186","title":"Comparison of direct identification of bacteria from VersaTrek Blood culture bottles using a seven present saponin extraction method and SepsiTyper by the Bruker MALDI-TOF","year":2014,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Blood culture; Gram staining; Microbiology; Bacteremia; Gram-positive bacteria; Enterococcus; Bacteria; Gram-negative bacteria; Biology; Gram; Antibiotics; Medicine; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007250804,0.0005931864,0.0003592373,0.001293523,0.0001650766,0.0004915899,0.0005028584,0.0004275854,0.001204844],"category_scores_gemma":[0.001731681,0.000240857,0.0003301137,0.000670087,0.0002476507,0.0005852138,0.0006492098,0.0002375118,0.0006356273],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002085446,"about_ca_system_score_gemma":0.0001901622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004383238,"about_ca_topic_score_gemma":0.001002521,"domain_scores_codex":[0.9982869,0.0002647997,0.0003013866,0.0003154273,0.0007225602,0.0001088386],"domain_scores_gemma":[0.9985591,0.0005140486,0.000375359,0.00009269732,0.0003763581,0.00008247689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009615606,0.000149215,0.02163663,0.0003227962,0.00006834641,0.000148784,0.0001647889,0.0001240646,0.9570099,0.00003906536,0.00009526652,0.01927962],"study_design_scores_gemma":[0.0000355328,0.003140194,0.1912617,0.00005222934,0.0001949422,0.003602886,0.0003536495,0.003197513,0.7966638,0.00005401673,0.001390154,0.0000533527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928317,0.0009798839,0.004922606,0.00004356566,0.00002774698,0.00003762589,0.0003663621,0.00005843718,0.0007320942],"genre_scores_gemma":[0.9734322,0.001235378,0.02206356,0.00006978787,0.00002534196,0.00008361217,0.001978568,0.00002749905,0.001084025],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001293523,"threshold_uncertainty_score":0.004030645,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01405022239902956,"score_gpt":0.3395556516390469,"score_spread":0.3255054292400174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}