{"id":"W2130591372","doi":"10.1371/journal.pgen.1002219","title":"Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development","year":2011,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":128,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; York University; U.S. Department of Health and Human Services","keywords":"Rhodococcus; Biology; Biochemistry; Metabolic pathway; Bacteria; Catabolism; Gene; Enzyme; Ralstonia; Polyhydroxyalkanoates; Bioconversion; Genetics; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001669031,0.0004080592,0.0003129802,0.0003312069,0.0001661167,0.0003669516,0.0002499052,0.000242485,0.0005046774],"category_scores_gemma":[0.0001964198,0.0001439326,0.0004518246,0.000390106,0.0001152701,0.0001401088,0.0002876236,0.0003743455,0.000476826],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003576171,"about_ca_system_score_gemma":0.0003185652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002673672,"about_ca_topic_score_gemma":0.001947869,"domain_scores_codex":[0.9998907,0.00002067342,0.00001067661,0.00002180972,0.00003724617,0.00001894622],"domain_scores_gemma":[0.9999182,0.00001621518,0.00001543237,0.00001056129,0.00001729569,0.00002235271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000126795,0.00002442863,0.0003169545,0.00003158783,0.000003886127,0.00004894467,0.00002373224,0.0002023238,0.9966221,0.00006984614,0.00001830859,0.002510999],"study_design_scores_gemma":[0.00005973844,0.0005934932,0.05373383,0.00003820664,0.00008525596,0.001339585,0.0003119928,0.004966467,0.9313824,0.0004466598,0.007014573,0.00002775542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934936,0.0006863755,0.002753587,0.000100965,0.000007217468,0.00004287837,0.001268738,0.0000728418,0.001573785],"genre_scores_gemma":[0.9848348,0.0005507911,0.008789974,0.0000513726,0.00000543342,0.00003833438,0.004251135,0.00005292303,0.001425397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002673672,"threshold_uncertainty_score":0.005316257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06396705397105035,"score_gpt":0.2371974159953485,"score_spread":0.1732303620242981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}