{"id":"W2130591372","doi":"10.1371/journal.pgen.1002219","title":"Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development","year":2011,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":128,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; York University; U.S. Department of Health and Human Services","keywords":"Rhodococcus; Biology; Biochemistry; Metabolic pathway; Bacteria; Catabolism; Gene; Enzyme; Ralstonia; Polyhydroxyalkanoates; Bioconversion; Genetics; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006229727,0.00009678913,0.0001242522,0.00002889606,0.00003529925,0.000003929218,0.00004903173,0.00006789425,0.000006672376],"category_scores_gemma":[0.0000130919,0.00009180637,0.00002693567,0.00003199112,0.00004835925,0.000001156944,0.000039055,0.00002689549,0.000001685107],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005631357,"about_ca_system_score_gemma":0.00004499555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":8.660325e-7,"about_ca_topic_score_gemma":0.000003306386,"domain_scores_codex":[0.9994932,0.00000938404,0.0001575015,0.0001859583,0.00004222885,0.0001117672],"domain_scores_gemma":[0.999683,0.000002436539,0.00005558289,0.0001198946,0.00009961451,0.00003946992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005801405,0.00006237296,0.0003016371,0.00003962236,0.0000784701,5.215554e-8,0.0002860278,0.00004812551,0.9978781,0.00002930648,0.0001344726,0.001083851],"study_design_scores_gemma":[0.0002452539,0.000138104,0.002152854,0.000005335632,0.00002604682,0.000004039272,0.00004119123,0.00009258717,0.9809645,0.0000389529,0.01617748,0.0001136388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916165,0.001479829,0.006396664,0.000006478042,0.0001448786,0.0002051699,0.00002604192,0.000006352273,0.0001181084],"genre_scores_gemma":[0.9697056,0.0001404984,0.02972199,0.00001715116,0.0001668379,0.00002009149,0.00005418585,0.00001143474,0.0001622199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02332532,"threshold_uncertainty_score":0.3743755,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06396705397105035,"score_gpt":0.2371974159953485,"score_spread":0.1732303620242981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}