{"id":"W2130615682","doi":"10.1089/aid.2012.0024","title":"Development of a Novel Codon-Specific Polymerase Chain Reaction for the Detection of CXCR4-Utilizing HIV Type 1 Subtype B","year":2013,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; AIDS Vancouver","funders":"National Institute of Child Health and Human Development; National Institute of Mental Health; International Maternal Pediatric Adolescent AIDS Clinical Trials Network; University of Washington; National Institutes of Health; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Children's Hospital of Philadelphia; National Institute of Allergy and Infectious Diseases; Pfizer","keywords":"Genotyping; Biology; Primer (cosmetics); Consensus sequence; Virology; Polymerase chain reaction; Population; Virus; Genetics; V3 loop; Computational biology; Gene; Genotype; Peptide sequence; Medicine; Chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00241412,0.00126989,0.0008217487,0.001689193,0.0003193062,0.0006486403,0.0007239511,0.001229573,0.00183197],"category_scores_gemma":[0.003334548,0.0008090266,0.0005698183,0.0003950045,0.0005940511,0.0006180984,0.0005176779,0.001225501,0.001624979],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003213716,"about_ca_system_score_gemma":0.0007403676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003998787,"about_ca_topic_score_gemma":0.001196484,"domain_scores_codex":[0.9965857,0.001102172,0.0002798191,0.001153416,0.0006582817,0.0002205491],"domain_scores_gemma":[0.9974837,0.00126432,0.0003220073,0.0002350001,0.0005207499,0.000174251],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002623957,0.0001433001,0.003646925,0.0001309086,0.00003368108,0.0001142106,0.00007247573,0.0003224907,0.955283,0.0003732978,0.0001926466,0.03942461],"study_design_scores_gemma":[0.0002377249,0.002972143,0.0189761,0.0001235205,0.0001877233,0.003554885,0.0001288641,0.03173429,0.9265636,0.000969802,0.01444599,0.0001053702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2096677,0.001865044,0.7813771,0.0002152104,0.0001788982,0.00132973,0.001044293,0.0009925865,0.003329316],"genre_scores_gemma":[0.1761197,0.0008741005,0.816671,0.0003014813,0.0000568957,0.00159505,0.001774593,0.00008909398,0.002518121],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00241412,"threshold_uncertainty_score":0.01276726,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.116104125853847,"score_gpt":0.3471139370832621,"score_spread":0.2310098112294151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}