{"id":"W2130683659","doi":"10.1101/gr.670002","title":"Gene Expression Profiling of Embryo-Derived Stem Cells Reveals Candidate Genes Associated With Pluripotency and Lineage Specificity","year":2002,"lang":"en","type":"article","venue":"Genome Research","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Japan Society for the Promotion of Science; National Institutes of Health","keywords":"Biology; Embryonic stem cell; Induced pluripotent stem cell; Gene expression profiling; Lineage markers; Stem cell; Gene; Cellular differentiation; Rex1; Stem cell marker; Genetics; Molecular biology; Gene expression; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009726267,0.0002143941,0.0002002088,0.0003609701,0.0001123321,0.0002518155,0.00006962494,0.0001517987,0.0005293995],"category_scores_gemma":[0.0001664616,0.0001005744,0.0001289161,0.000340314,0.0001692704,0.0001316367,0.00009721538,0.0001743344,0.000252118],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001252651,"about_ca_system_score_gemma":0.0001119811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003110085,"about_ca_topic_score_gemma":0.0006090721,"domain_scores_codex":[0.9999231,0.000009575271,0.000005389847,0.00002217054,0.00002041839,0.00001934062],"domain_scores_gemma":[0.9999064,0.00003233842,0.00001789221,0.000008118028,0.00001527101,0.00001991936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003338808,0.000002867507,0.001225394,0.000009198979,0.000002159914,0.00002198276,0.00001084971,0.00002365073,0.9979216,0.00001978476,0.000009195576,0.0007198872],"study_design_scores_gemma":[0.00001297803,0.0002657039,0.1878688,0.000008778843,0.00004841851,0.0005025847,0.0001229336,0.001351472,0.8071721,0.000206691,0.00242989,0.000009682401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955225,0.0006901331,0.002254325,0.00003327647,0.000004570301,0.00001288028,0.0008976935,0.0000267423,0.0005578061],"genre_scores_gemma":[0.9885239,0.00112522,0.004618225,0.00008225435,0.00001052699,0.00003693139,0.003670465,0.00001870837,0.001913796],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005293995,"threshold_uncertainty_score":0.001771033,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04514229735796135,"score_gpt":0.2843954835959115,"score_spread":0.2392531862379502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}