{"id":"W2130683659","doi":"10.1101/gr.670002","title":"Gene Expression Profiling of Embryo-Derived Stem Cells Reveals Candidate Genes Associated With Pluripotency and Lineage Specificity","year":2002,"lang":"en","type":"article","venue":"Genome Research","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Japan Society for the Promotion of Science; National Institutes of Health","keywords":"Biology; Embryonic stem cell; Induced pluripotent stem cell; Gene expression profiling; Lineage markers; Stem cell; Gene; Cellular differentiation; Rex1; Stem cell marker; Genetics; Molecular biology; Gene expression; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015728,0.0002368564,0.0003473124,0.0002299252,0.0002807532,0.00006081251,0.0004562044,0.0002438628,0.00009547784],"category_scores_gemma":[0.00008102687,0.0001975871,0.00006807449,0.0004162689,0.0003048061,0.00001162607,0.0005423383,0.0003799248,0.00002835348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006429173,"about_ca_system_score_gemma":0.00009656304,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004011363,"about_ca_topic_score_gemma":0.00001991344,"domain_scores_codex":[0.9964516,0.0006295231,0.0004036144,0.0007557709,0.0009041864,0.0008553668],"domain_scores_gemma":[0.9982123,0.00009128822,0.0001431532,0.0006690723,0.0006062213,0.0002779623],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001541113,0.000145525,0.002356552,0.0001293378,0.00006895619,0.00004249518,0.0001129238,0.00007388213,0.9962096,0.000002732782,0.0002122434,0.000491615],"study_design_scores_gemma":[0.0007566526,0.0005450044,0.002683559,0.00006952308,0.000008773956,0.00001122774,0.0001576979,0.000247024,0.9948467,0.000007922071,0.0004416268,0.0002242582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918225,0.00608536,0.0002654441,0.00006777449,0.00003067994,0.0007865488,0.0001360196,0.00001600252,0.0007896668],"genre_scores_gemma":[0.9883504,0.004895895,0.001323874,0.000008920204,0.0001495918,0.00005126138,0.00009827931,0.0000556503,0.005066162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004276495,"threshold_uncertainty_score":0.8057369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04514229735796135,"score_gpt":0.2843954835959115,"score_spread":0.2392531862379502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}