{"id":"W2130807581","doi":"10.1128/jb.00120-09","title":"Whole-Genome Tiling Array Analysis of <i>Mycobacterium leprae</i> RNA Reveals High Expression of Pseudogenes and Noncoding Regions","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut national de la recherche scientifique; Japan Health Sciences Foundation","keywords":"Pseudogene; Biology; Genetics; Genome; Non-coding RNA; Gene; RNA; Long non-coding RNA; Noncoding DNA; Tiling array; Intergenic region; Mycobacterium leprae; Transcription (linguistics); DNA microarray; Gene expression; Leprosy","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000778362,0.0001946048,0.00144859,0.0009164851,0.00005421994,0.00001561894,0.0001845402,0.0001907449,0.000141645],"category_scores_gemma":[0.0004785223,0.0001475459,0.0003856363,0.0005559233,0.000153439,0.0001980309,0.00004774867,0.0003073775,0.000001465056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004971316,"about_ca_system_score_gemma":0.0001291106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002246949,"about_ca_topic_score_gemma":0.000003156798,"domain_scores_codex":[0.9977531,0.0002234362,0.001168431,0.0002297079,0.0002955325,0.0003298158],"domain_scores_gemma":[0.9973232,0.0003565046,0.001127943,0.0003461494,0.00052771,0.0003185302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008857372,0.0001665274,0.06521983,0.00009848585,0.0004615588,0.00005935115,0.0002002723,0.0000163995,0.9320237,0.00002963974,0.0001563428,0.0006821369],"study_design_scores_gemma":[0.001368368,0.00227509,0.7958547,0.0004427102,0.001292908,0.0003395388,0.0001302429,0.00001000952,0.1971194,0.0001493666,0.0008760407,0.0001416405],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964041,0.001038724,0.0004807661,0.001549067,0.0001392749,0.0001325897,0.00007052786,0.000007223652,0.0001776901],"genre_scores_gemma":[0.9942408,0.002026405,0.003104121,0.000236937,0.000282345,0.000002031651,0.00004406146,0.00001299975,0.00005034468],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7349043,"threshold_uncertainty_score":0.6016745,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02577245777145589,"score_gpt":0.2992702374107727,"score_spread":0.2734977796393168,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}