{"id":"W2131067027","doi":"10.1186/1752-0509-3-63","title":"The Symbiosis Interactome: a computational approach reveals novel components, functional interactions and modules in Sinorhizobium meliloti","year":2009,"lang":"en","type":"article","venue":"BMC Systems Biology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation","funders":"Canadian Institutes of Health Research; Universität Bielefeld","keywords":"Interactome; Biology; Symbiosis; Computational biology; Sinorhizobium meliloti; Systems biology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004053112,0.000182625,0.0002637756,0.00004204135,0.0002975919,0.0001123307,0.0002199991,0.0001177293,0.0000139683],"category_scores_gemma":[0.00009805689,0.00007052689,0.00007950242,0.0002702612,0.0001048682,0.000119228,0.00006708691,0.0001792094,0.00002085575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007387561,"about_ca_system_score_gemma":0.000009241873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004810075,"about_ca_topic_score_gemma":0.0001939916,"domain_scores_codex":[0.9984481,0.0002740918,0.000445364,0.0003969777,0.0001288559,0.0003066366],"domain_scores_gemma":[0.9986122,0.0009666778,0.0001758671,0.00007689863,0.00009567507,0.00007269378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001840116,0.0004242563,0.1321954,0.00001748306,0.00006185105,8.148911e-7,0.00009251029,0.00004279217,0.845581,0.01861883,0.0008893251,0.001891778],"study_design_scores_gemma":[0.0004024032,0.0002113053,0.9933862,0.00005205096,0.00001375072,0.0001258811,0.0004381795,0.002352558,0.0002306326,0.001120911,0.001421234,0.0002448644],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970654,0.0005898457,0.0001330933,0.000924008,0.000470711,0.0003547107,0.00007593213,0.00005982641,0.0003265077],"genre_scores_gemma":[0.9986926,0.000007188166,0.0004475498,0.0001754484,0.0002520506,0.00005203234,0.0002494399,0.00000141262,0.0001222708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8611909,"threshold_uncertainty_score":0.2876003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04125386431900009,"score_gpt":0.2422568134273476,"score_spread":0.2010029491083475,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}