{"id":"W2131071075","doi":"10.1056/nejmoa1003176","title":"Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak","year":2011,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":748,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fraser Health; Public Health Agency of Canada; Health Canada; Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; BC Centre for Disease Control; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Outbreak; Genotyping; Genome; Whole genome sequencing; Tuberculosis; Mycobacterium tuberculosis; Contact tracing; Biology; Transmission (telecommunications); Genetics; Genotype; Evolutionary biology; Virology; Medicine; Disease; Infectious disease (medical specialty); Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000440052,0.0002363104,0.0002308446,0.001330245,0.0006048745,0.0005493598,0.0003532023,0.0004359382,0.0005894118],"category_scores_gemma":[0.001575188,0.0001045816,0.0003075967,0.00178671,0.0002172571,0.0002217868,0.0004101584,0.0003849756,0.0001346906],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001090549,"about_ca_system_score_gemma":0.0006514495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05885298,"about_ca_topic_score_gemma":0.07906037,"domain_scores_codex":[0.9996648,0.00009025809,0.00001699463,0.0001019443,0.00006353285,0.00006246709],"domain_scores_gemma":[0.9991516,0.0002365008,0.0002296334,0.00005618147,0.0001932158,0.0001328605],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005721491,0.0002234972,0.8739535,0.0004308535,0.0006138843,0.001049236,0.002412613,0.01381617,0.06488726,0.001464354,0.003020842,0.03755583],"study_design_scores_gemma":[0.0000105474,0.0000633181,0.9725593,0.00002674405,0.00008801898,0.0002275628,0.001065445,0.02119363,0.001713407,0.0008110471,0.002228111,0.00001282434],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947943,0.000169734,0.001862189,0.0001060331,0.000003947547,0.00002350202,0.002373463,0.00003097802,0.0006358924],"genre_scores_gemma":[0.9896437,0.0001450596,0.004243711,0.00006759384,0.00000652412,0.0000333591,0.005510481,0.00001007149,0.000339528],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05885298,"threshold_uncertainty_score":0.1170208,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05737237002724913,"score_gpt":0.3184656879593674,"score_spread":0.2610933179321182,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}