{"id":"W2131264071","doi":"10.1128/jcm.00593-07","title":"First Contemporary Case of Human Infection with <i>Cryptococcus gattii</i> in Puget Sound: Evidence for Spread of the Vancouver Island Outbreak","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Washington","keywords":"Cryptococcus gattii; Outbreak; Cryptococcosis; Sound (geography); Genotyping; Genotype; Geography; Virology; Biology; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002148758,0.0001059925,0.0007582126,0.0001116851,0.00006294023,0.00000236157,0.00006613453,0.0001665364,0.00001322949],"category_scores_gemma":[0.001127188,0.00005703463,0.0003033947,0.0001436764,0.0003971018,0.0000641483,0.00003813309,0.0003963133,3.967667e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003414249,"about_ca_system_score_gemma":0.0001301009,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003335077,"about_ca_topic_score_gemma":0.02059726,"domain_scores_codex":[0.9980902,0.0001236409,0.001481928,0.0001211358,0.00004235293,0.0001407518],"domain_scores_gemma":[0.9961418,0.002094338,0.001106902,0.0001618046,0.0004462794,0.00004890698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002674828,0.0005765202,0.9784395,0.0001885601,0.0002373254,0.0001030521,0.0001551553,0.00002679985,0.009926662,0.00006816686,0.007372556,0.0002308696],"study_design_scores_gemma":[0.02121333,0.02701976,0.902795,0.00403555,0.0007020803,0.008489097,0.0006687907,0.00001681969,0.008485716,0.002009048,0.02422735,0.0003374474],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970029,0.0004421648,0.0007922145,0.0002942839,0.0007479297,0.0003983636,0.00001544981,0.000002588467,0.0003040879],"genre_scores_gemma":[0.9991356,0.00007949385,0.0002530426,0.0002163156,0.0002281951,0.000003316088,7.071679e-7,0.000007840853,0.00007554283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07564449,"threshold_uncertainty_score":0.9972743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1076677041841119,"score_gpt":0.4202733446814499,"score_spread":0.312605640497338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}