{"id":"W2131337502","doi":"10.1186/s12866-015-0498-1","title":"Chlamydia Outer Protein (Cop) B from Chlamydia pneumoniae possesses characteristic features of a type III secretion (T3S) translocator protein","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hamilton Health Sciences; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Biology; Chlamydia; Translocator protein; Chlamydiales; Secretion; Chlamydophila pneumoniae; Microbiology; Type three secretion system; Bacterial protein; Parasitology; Chlamydiaceae; Virology; Immunology; Bacteria; Gene; Inflammation; Genetics; Virulence; Endocrinology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006328566,0.0004380338,0.0007850244,0.0003460137,0.0001472826,0.00003107004,0.0005273345,0.0008225134,0.0009200064],"category_scores_gemma":[0.0006833241,0.0003825168,0.0001779726,0.0004287998,0.0007699475,0.0001926659,0.0001504712,0.000833333,0.001215117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001442674,"about_ca_system_score_gemma":0.0006527143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001368222,"about_ca_topic_score_gemma":0.0003659597,"domain_scores_codex":[0.9966599,0.0009522814,0.0006891161,0.00092642,0.00006048267,0.0007118142],"domain_scores_gemma":[0.997825,0.0001817428,0.0003446488,0.0008712109,0.0006942848,0.00008313174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001322848,0.0004226412,0.00484252,0.00008428426,0.0002740341,0.000009387334,0.0005988764,0.000003715565,0.9906277,0.0003091012,0.0007791441,0.0007257191],"study_design_scores_gemma":[0.002444565,0.0007703381,0.03969049,0.0001191693,0.00007347648,0.0002851618,0.0002134337,0.000001389032,0.9386051,0.0003043285,0.01702235,0.0004702193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930011,0.002179229,0.0004903848,0.0002522082,0.0009837832,0.001911822,0.0003888103,0.0001536636,0.0006389851],"genre_scores_gemma":[0.9928477,0.00002603503,0.0004119176,0.00004220704,0.0002053977,0.0002710244,0.001349585,0.00005804348,0.004788074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05202265,"threshold_uncertainty_score":0.9999933,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.031885623564828,"score_gpt":0.2777205711936622,"score_spread":0.2458349476288342,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}