{"id":"W2131415145","doi":"10.1038/nature11209","title":"A framework for human microbiome research","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2749,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Guelph","funders":"Los Alamos National Laboratory; U.S. National Library of Medicine; Division of Biological Infrastructure; Crohn's and Colitis Foundation; National Institute of General Medical Sciences; National Cancer Institute; National Human Genome Research Institute; Defense Threat Reduction Agency; National Institute of Dental and Craniofacial Research; Gordon and Betty Moore Foundation; Crohn's and Colitis Foundation of Canada; Vlaamse regering; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; Office of Science; Horace H. Rackham School of Graduate Studies, University of Michigan; Army Research Office; Fonds Wetenschappelijk Onderzoek; Gladstone Institutes; Howard Hughes Medical Institute; U.S. Department of Energy; Rice University; National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Science Foundation","keywords":"Microbiome; Human microbiome; Computational biology; Human Microbiome Project; Data science; Biology; Computer science; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03617346,0.002249957,0.002098598,0.007949388,0.003049265,0.01287365,0.005045318,0.006479389,0.02102838],"category_scores_gemma":[0.03291561,0.0008488165,0.002306414,0.006010933,0.01519321,0.009692321,0.01133695,0.007031767,0.007811249],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005853689,"about_ca_system_score_gemma":0.01175287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007038619,"about_ca_topic_score_gemma":0.003450989,"domain_scores_codex":[0.9675857,0.02398705,0.001463368,0.003010122,0.003112235,0.0008415051],"domain_scores_gemma":[0.9820639,0.01031877,0.0009418592,0.002694122,0.002555472,0.001425912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0000148658,0.00001904145,0.0002523424,0.0003471425,0.00002476614,0.000116033,0.001022824,0.0006564066,0.0001102904,0.9452621,0.02162158,0.03055244],"study_design_scores_gemma":[0.00001529919,0.00002529787,0.000218539,0.0008075109,0.00001126834,0.0001150497,0.0005743616,0.000967334,0.00004926489,0.6283848,0.3688076,0.00002359964],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.001425134,0.06738438,0.6360914,0.1210866,0.007960455,0.001541258,0.002885057,0.001429096,0.1601966],"genre_scores_gemma":[0.06259833,0.05278263,0.8139021,0.02096027,0.00794951,0.007061329,0.004233278,0.0006994364,0.02981308],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.03617346,"threshold_uncertainty_score":0.1913058,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04652585870732918,"score_gpt":0.4421267731362008,"score_spread":0.3956009144288716,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}