{"id":"W2131434685","doi":"10.1128/jb.00787-10","title":"Prophage-Stimulated Toxin Production in Clostridium difficile NAP1/027 Lysogens","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":117,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Lysogen; Biology; Prophage; Microbiology; Virulence; Siphoviridae; Virology; Plasmid; Clostridium difficile toxin A; Lysogenic cycle; Clostridium difficile; Bacteriophage; Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014749,0.0005675628,0.0003947598,0.0003849904,0.0001317026,0.0004434029,0.000152756,0.0002437252,0.000932087],"category_scores_gemma":[0.0002499686,0.0001770513,0.0003904929,0.0002233567,0.0002020198,0.000158619,0.0004177146,0.0006380146,0.0004611836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000221295,"about_ca_system_score_gemma":0.0002191642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007081709,"about_ca_topic_score_gemma":0.000735671,"domain_scores_codex":[0.9997074,0.00003468256,0.00002198976,0.00005296782,0.0001271299,0.00005567324],"domain_scores_gemma":[0.9996854,0.00009462239,0.00005924006,0.00003339737,0.00005946132,0.00006786721],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003403021,0.00001189337,0.0001877473,0.00002147124,0.000001639275,0.00002381321,0.00001150078,0.00001278536,0.9994475,0.000004387468,0.000007483312,0.0002356191],"study_design_scores_gemma":[0.00001605433,0.0006940584,0.03125377,0.00001432796,0.00002215836,0.0003191356,0.0001348333,0.0007715983,0.9659142,0.0000243709,0.000820495,0.00001509306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971622,0.0004248328,0.00102342,0.00003984711,0.00002381927,0.00003944994,0.0005685089,0.00004743234,0.0006705623],"genre_scores_gemma":[0.9913936,0.0005296367,0.003251592,0.0001032295,0.00002290876,0.0001060996,0.002423838,0.00005130368,0.002117772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000932087,"threshold_uncertainty_score":0.003118157,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0472254285220026,"score_gpt":0.2943737168341103,"score_spread":0.2471482883121077,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}