{"id":"W2131434685","doi":"10.1128/jb.00787-10","title":"Prophage-Stimulated Toxin Production in Clostridium difficile NAP1/027 Lysogens","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":117,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Lysogen; Biology; Prophage; Microbiology; Virulence; Siphoviridae; Virology; Plasmid; Clostridium difficile toxin A; Lysogenic cycle; Clostridium difficile; Bacteriophage; Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006904068,0.0002432999,0.0007646955,0.0006686967,0.00005415625,0.00001306857,0.0002179018,0.0002789154,0.0009761014],"category_scores_gemma":[0.0006963342,0.0001916944,0.0002334719,0.0005525616,0.0001709226,0.0001400223,0.00008188796,0.000866009,0.00007723644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003017853,"about_ca_system_score_gemma":0.0004608728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007031088,"about_ca_topic_score_gemma":0.00001787748,"domain_scores_codex":[0.9975589,0.0001964838,0.001049866,0.0003197753,0.0003448576,0.000530097],"domain_scores_gemma":[0.9984299,0.00006967912,0.0004037759,0.0003519786,0.0004876218,0.0002570424],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003834463,0.001201522,0.01413504,0.00009654553,0.00016298,0.001321643,0.0006322339,0.0000279861,0.9726346,0.00001755701,0.001105006,0.004830458],"study_design_scores_gemma":[0.003634952,0.004089147,0.09709354,0.0002361258,0.0001500038,0.003734766,0.0003078037,0.0001105401,0.8879976,0.00006895306,0.002307269,0.0002693116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963027,0.0004106437,0.00001299856,0.0009447075,0.0007935648,0.0004253225,0.000006769383,0.0000249402,0.001078363],"genre_scores_gemma":[0.9978118,0.0003188706,0.0005004444,0.00008810493,0.000679855,0.000008497669,0.00001163841,0.00003543717,0.0005453427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08463699,"threshold_uncertainty_score":0.9999371,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0472254285220026,"score_gpt":0.2943737168341103,"score_spread":0.2471482883121077,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}