{"id":"W2131569339","doi":"10.1016/j.virusres.2009.06.011","title":"Probe binding to host proteins: A cause for false positive signals in viroid detection by tissue hybridization","year":2009,"lang":"en","type":"article","venue":"Virus Research","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Huazhong Agricultural University; Ohio State University; University of Guelph; National Science Foundation","keywords":"Biology; Viroid; In situ hybridization; Computational biology; Nucleic acid thermodynamics; Molecular probe; Plant virus; Gene; Molecular biology; RNA; Genetics; Messenger RNA; Virus","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001605936,0.0001478696,0.0001974891,0.0001592168,0.0005403279,0.0001797357,0.000291415,0.00009377932,0.0000361166],"category_scores_gemma":[0.001220664,0.00006917223,0.00003695719,0.001522505,0.00005942924,0.0002291789,0.0001158166,0.0002839103,0.000129954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002116319,"about_ca_system_score_gemma":0.00001914858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001649628,"about_ca_topic_score_gemma":0.005854067,"domain_scores_codex":[0.9974005,0.0003575757,0.0002349298,0.0004909348,0.0007124717,0.0008035548],"domain_scores_gemma":[0.9988474,0.0005541552,0.00003900234,0.00006480394,0.0003167774,0.0001778938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002783306,0.0001411526,0.00003943488,0.00000766979,0.000007796853,0.00001111946,0.0001377461,0.000004367534,0.9255979,0.00001335348,0.001552609,0.07220849],"study_design_scores_gemma":[0.0001926167,0.001791923,0.006438013,0.00006360019,0.0000018042,0.000002310537,0.0001436905,0.0001060119,0.9818611,0.0002524467,0.008977346,0.0001690994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919898,0.0002439917,0.0002810779,0.002685007,0.00001818348,0.003679042,0.0009232268,0.00005223893,0.0001274613],"genre_scores_gemma":[0.9979676,0.0002017865,0.0001181649,0.0001159334,0.0001315997,0.0007599876,0.0001118275,0.000002338979,0.0005907693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0720394,"threshold_uncertainty_score":0.415582,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08312880472882801,"score_gpt":0.3658778632622793,"score_spread":0.2827490585334513,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}