{"id":"W2131689086","doi":"10.15698/mic2015.02.189","title":"Fancy a gene? A surprisingly complex evolutionary history of peroxiredoxins.","year":2015,"lang":"en","type":"letter","venue":"Microbial Cell","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"King Abdullah University of Science and Technology; Grantová Agentura České Republiky","keywords":"Biology; Protist; Monophyly; Phylum; Evolutionary biology; Apicomplexa; Horizontal gene transfer; Cryptosporidium; Protozoa; Multicellular organism; Plasmodium (life cycle); Phylogenetics; Zoology; Intracellular parasite; Gene; Genetics; Ecology; Clade; Parasite hosting; Malaria; Protozoal disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0003173095,0.0006161679,0.001144962,0.0004661827,0.0001345226,0.000009982382,0.0008678867,0.00168909,0.001872838],"category_scores_gemma":[0.0001063545,0.0006167316,0.0004127581,0.0001470264,0.001382113,0.00007229857,0.0006172196,0.00249568,0.002067268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001666377,"about_ca_system_score_gemma":0.001604313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006083017,"about_ca_topic_score_gemma":0.00004071125,"domain_scores_codex":[0.9966544,0.0006444178,0.0007249673,0.0007898921,0.0001695846,0.00101674],"domain_scores_gemma":[0.9979209,0.0002236489,0.0004861989,0.0007981133,0.0005296657,0.00004149037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008378884,0.0001032589,0.000025959,0.0002247395,0.0001873781,0.0001140391,0.0005108245,6.505287e-7,0.4032838,0.000001466409,0.5953893,0.00007477588],"study_design_scores_gemma":[0.001402781,0.0002341404,0.0001103413,0.00006746937,0.0001118372,0.0001812589,0.00003673901,5.466637e-7,0.01547605,0.0000224068,0.9818187,0.0005376791],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"other","genre_scores_codex":[0.06526668,0.5121248,0.0001194274,0.2429375,0.03010321,0.00540106,0.01334642,0.001190884,0.12951],"genre_scores_gemma":[0.02052841,0.001313645,0.002429573,0.1454946,0.003298739,0.0001477527,0.01568896,0.0004663932,0.8106319],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.6811219,"threshold_uncertainty_score":0.9998056,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04305316250167045,"score_gpt":0.2389973348340133,"score_spread":0.1959441723323428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}