{"id":"W2131826163","doi":"10.1128/iai.71.4.2142-2152.2003","title":"An<i>Escherichia coli</i>MG1655 Lipopolysaccharide Deep-Rough Core Mutant Grows and Survives in Mouse Cecal Mucus but Fails To Colonize the Mouse Large Intestine","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; University of Guelph; Rhode Island Agricultural Experiment Station; University of Oklahoma","keywords":"Biology; Microbiology; Mucus; Mutant; Escherichia coli; Agar; Cecum; Lipopolysaccharide; Agar plate; Kanamycin; Bacteria; Molecular biology; Biochemistry; Antibiotics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005448507,0.0001622929,0.0001781736,0.00002087465,0.0004234624,0.0001510098,0.0001145775,0.0001059393,0.00006634516],"category_scores_gemma":[0.0002056765,0.00006810035,0.00003350111,0.0002778427,0.00009290256,0.0001929785,0.00008368454,0.000313864,0.000004675408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002630132,"about_ca_system_score_gemma":0.000008910066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004169552,"about_ca_topic_score_gemma":0.01088842,"domain_scores_codex":[0.9989448,0.0002651747,0.0002111267,0.0002155994,0.00008735325,0.0002759384],"domain_scores_gemma":[0.9995226,0.0001308694,0.00006206254,0.00009345818,0.00006187565,0.0001291865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006807589,0.0003770083,0.05122554,0.000006030903,0.00001225178,0.000002176908,0.0004843257,0.00000740303,0.9439331,0.001480073,0.00001939051,0.002384585],"study_design_scores_gemma":[0.001388241,0.002699858,0.7743236,0.00003722236,0.00003357745,0.00006657714,0.003959277,0.001454025,0.2030025,0.0009665887,0.01131738,0.0007510837],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988766,0.00008311,0.00004352878,0.0003025857,0.00008985853,0.0003241742,0.00004088078,0.00005434728,0.0001848972],"genre_scores_gemma":[0.9990527,0.0002030203,0.00004756447,0.0005344797,0.00002962305,0.00002000463,0.00002058435,0.000002031252,0.00009000707],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7409306,"threshold_uncertainty_score":0.6303143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02223683510711465,"score_gpt":0.2437301324097425,"score_spread":0.2214932973026278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}