{"id":"W2131908402","doi":"10.1128/jb.01691-07","title":"<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>and<i>M. avium</i>subsp.<i>avium</i>Are Independently Evolved Pathogenic Clones of a Much Broader Group of<i>M. avium</i>Organisms","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":145,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Rijksinstituut voor Volksgezondheid en Milieu; McGill University; University of Washington","keywords":"Paratuberculosis; Biology; Subspecies; Microbiology; Mycobacterium; Nonsynonymous substitution; Phylogenetic tree; Mycobacterium avium subspecies paratuberculosis; Phylogenetics; Genetics; Bacteria; Gene; Zoology; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001756993,0.0002201082,0.000216074,0.0004894275,0.0002022006,0.0002880426,0.0003166059,0.0002620057,0.0008831301],"category_scores_gemma":[0.0005690614,0.0001284844,0.0002346521,0.0005616016,0.0001587614,0.0001489381,0.0002233876,0.0003430932,0.0003985482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002028028,"about_ca_system_score_gemma":0.0001401456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002006431,"about_ca_topic_score_gemma":0.002360222,"domain_scores_codex":[0.999769,0.00003567765,0.00001876077,0.00007310379,0.00006088567,0.00004259383],"domain_scores_gemma":[0.9995479,0.00008872418,0.0002184071,0.00003448387,0.00006298492,0.0000474717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002008673,0.00006078491,0.1224156,0.0001397802,0.00008413241,0.0001971381,0.0003411303,0.0003382443,0.8640251,0.0002460468,0.0001419525,0.01180926],"study_design_scores_gemma":[0.00001441815,0.0003439187,0.9032263,0.00003965704,0.00009056377,0.00225156,0.0003334554,0.001768746,0.08616234,0.0003125025,0.005441247,0.00001525935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997032,0.0005867414,0.0009882154,0.00002913695,0.000004375458,0.00001271142,0.0005343054,0.00001405604,0.0007983412],"genre_scores_gemma":[0.995291,0.0002632839,0.002124221,0.00003868626,0.00000813946,0.00001805698,0.001845411,0.000008099512,0.0004030255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002006431,"threshold_uncertainty_score":0.003989458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02047047253588395,"score_gpt":0.2599551642033036,"score_spread":0.2394846916674197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}