{"id":"W2131985618","doi":"10.1093/molbev/msh130","title":"Covarion Shifts Cause a Long-Branch Attraction Artifact That Unites Microsporidia and Archaebacteria in EF-1α Phylogenies","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Microsporidia; Artifact (error); Evolutionary biology; Attraction; Zoology; Botany; Spore","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001720593,0.0001678035,0.0002004551,0.0001855748,0.0001928942,0.0000135313,0.00004145508,0.0003858396,0.00002552057],"category_scores_gemma":[0.00008243585,0.0001613379,0.00003549676,0.0001219966,0.0003782932,0.00008400531,0.00004294828,0.000238249,0.00005103069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007238469,"about_ca_system_score_gemma":0.00004583523,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000663331,"about_ca_topic_score_gemma":0.000561465,"domain_scores_codex":[0.9990553,0.0001497059,0.0001791405,0.0002997165,0.00001473939,0.0003014391],"domain_scores_gemma":[0.9996542,0.00008390694,0.00007013947,0.0001312382,0.00003359819,0.00002689281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001057398,0.00008939495,0.2963603,0.00001204456,0.0000579785,0.00001682615,0.0001715233,0.00004242843,0.6953142,0.007257452,0.000007746148,0.0005644335],"study_design_scores_gemma":[0.001369018,0.0002662968,0.8751397,0.00003686628,0.0000491696,0.0002452412,0.00004659312,0.000003611473,0.1114892,0.01089472,0.0002661555,0.0001934044],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821045,0.003314306,0.01367393,0.0001940549,0.0003997315,0.0001869749,0.00002470339,0.00003521863,0.0000665815],"genre_scores_gemma":[0.9991929,0.0002945397,0.000101142,0.0001010781,0.0000182869,0.00002206286,0.0002346056,0.000008946262,0.00002641979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.583825,"threshold_uncertainty_score":0.657917,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01065437538402805,"score_gpt":0.2632276244626009,"score_spread":0.2525732490785729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}