{"id":"W2131985618","doi":"10.1093/molbev/msh130","title":"Covarion Shifts Cause a Long-Branch Attraction Artifact That Unites Microsporidia and Archaebacteria in EF-1α Phylogenies","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Microsporidia; Artifact (error); Evolutionary biology; Attraction; Zoology; Botany; Spore","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009922453,0.0002982856,0.0002756005,0.0004085372,0.0005359593,0.0005890171,0.0002771103,0.000417035,0.001260477],"category_scores_gemma":[0.003828593,0.000249925,0.0003702078,0.0006003813,0.000541701,0.0005963438,0.000721393,0.0009609199,0.0003592222],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004597928,"about_ca_system_score_gemma":0.0003905136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008874675,"about_ca_topic_score_gemma":0.001763803,"domain_scores_codex":[0.9992006,0.0002447912,0.00006885628,0.0002657284,0.0001559533,0.00006413608],"domain_scores_gemma":[0.9976258,0.001149494,0.0006340288,0.0003717279,0.00009354983,0.0001253941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008252742,0.0001097135,0.2677496,0.0002129583,0.0002772976,0.000903363,0.0007484923,0.007693906,0.6558636,0.006856729,0.0004685136,0.0582905],"study_design_scores_gemma":[0.00004537243,0.0003534537,0.6892444,0.00006077028,0.0002952588,0.003162405,0.0005542474,0.1111212,0.1772343,0.01315157,0.004690356,0.00008660698],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9726402,0.0002632188,0.02597784,0.00008675674,0.00001500328,0.000009960156,0.0001281047,0.0001154182,0.0007635405],"genre_scores_gemma":[0.9937385,0.00006249439,0.005739835,0.00006732979,0.000008040967,0.00000756272,0.0002020163,0.00004209411,0.000132119],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001260477,"threshold_uncertainty_score":0.005247533,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01065437538402805,"score_gpt":0.2632276244626009,"score_spread":0.2525732490785729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}