{"id":"W2132012829","doi":"10.1110/ps.062146906","title":"Structural characterization of GntR/HutC family signaling domain","year":2006,"lang":"en","type":"article","venue":"Protein Science","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Characterization (materials science); Domain (mathematical analysis); Chemistry; Biology; Computational biology; Cell biology; Nanotechnology; Materials science; Mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003526043,0.00008413263,0.00007850049,0.00004695452,0.0001228284,0.00003266513,0.0002597629,0.00004830405,0.00001499099],"category_scores_gemma":[0.0000350835,0.00007543396,0.00003196735,0.0002243429,0.0002768186,0.00001122298,0.00008358819,0.00003984157,0.000003862032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000929725,"about_ca_system_score_gemma":0.0001076483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002447665,"about_ca_topic_score_gemma":0.000002350238,"domain_scores_codex":[0.9991073,0.00002761309,0.0001688857,0.0002625905,0.0002266956,0.0002069225],"domain_scores_gemma":[0.9995489,0.000002136078,0.0001084704,0.0001920591,0.0001094527,0.00003897614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001365759,0.000007257509,0.0008091505,0.00001235824,0.000001102024,4.318385e-7,0.00002171928,0.00001026681,0.997152,0.0008739034,0.000002003673,0.001096148],"study_design_scores_gemma":[0.0001352299,0.00007753979,0.009550779,0.00001613083,0.000001242236,0.000002625728,0.00001353216,0.00007843193,0.9885086,0.001019326,0.0004969951,0.00009960171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957905,0.0000771706,0.002563379,0.00003380929,0.00005555209,0.0002910325,0.00001555262,0.000009911854,0.001163062],"genre_scores_gemma":[0.9965543,0.000001789702,0.003058646,0.00004314746,0.0001307372,0.00002333654,0.00003255075,0.000006652397,0.0001489023],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008741628,"threshold_uncertainty_score":0.3076108,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01034418326946992,"score_gpt":0.229860839285526,"score_spread":0.2195166560160561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}