{"id":"W2132059141","doi":"10.1093/molbev/mst254","title":"Reduced Nuclear Genomes Maintain High Gene Transcription Levels","year":2013,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Génome Québec","keywords":"Biology; Genome; Genetics; Gene; Nuclear gene; Transcription (linguistics); Regulation of gene expression; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001060643,0.0001353743,0.0001148845,0.00004685695,0.0001592819,0.00001680353,0.0001161907,0.0002792835,0.00008208572],"category_scores_gemma":[0.00001720417,0.0001380821,0.00006183338,0.00005461323,0.0001543609,0.000007080089,0.0000706395,0.0000831665,0.0000605773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002086471,"about_ca_system_score_gemma":0.00002145945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001319664,"about_ca_topic_score_gemma":0.000005494538,"domain_scores_codex":[0.9991411,0.0001196938,0.0001207962,0.0003339371,0.0000432837,0.0002411813],"domain_scores_gemma":[0.9996353,0.000002876398,0.00004221226,0.0001875751,0.00005472391,0.00007729497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000379869,0.00002383705,0.003533446,0.000006751228,0.00005103636,0.000001968027,0.00002163313,0.00001012514,0.9839665,0.01067053,0.0001903742,0.001485841],"study_design_scores_gemma":[0.0013917,0.000902874,0.3847082,0.00001035197,0.00007142076,0.00008722142,0.0001161189,0.0001539002,0.5648008,0.04337119,0.003772642,0.0006135609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9770042,0.001389153,0.02058963,0.0004050078,0.0001257806,0.0002409249,0.00003635778,0.00001943965,0.0001894573],"genre_scores_gemma":[0.9971229,0.00009626769,0.001924258,0.000422143,0.00008697657,0.00001730324,0.0002087007,0.00001222191,0.0001092548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4191657,"threshold_uncertainty_score":0.5630826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006900768622988928,"score_gpt":0.2122181191367435,"score_spread":0.2053173505137546,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}