{"id":"W2132091595","doi":"10.1093/bioinformatics/btv376","title":"GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications","year":2015,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Visualization; Computer science; JSON; JavaScript; Annotation; World Wide Web; Scalable Vector Graphics; Metadata; Web application; Data visualization; Interactive visualization; Genome browser; Genome; Information retrieval; Genomics; Data mining; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001163225,0.00008924252,0.0001247163,0.0000654571,0.0000280051,0.00001436227,0.0003455892,0.00005668951,0.000002114884],"category_scores_gemma":[0.0000486176,0.00008713592,0.00002693042,0.00009388,0.00004626908,0.000006027878,0.0004098561,0.00002692017,0.000006331635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009397469,"about_ca_system_score_gemma":0.000196262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002155926,"about_ca_topic_score_gemma":0.00001843433,"domain_scores_codex":[0.9993687,0.00001077692,0.0003185524,0.0001248031,0.00005333464,0.0001238458],"domain_scores_gemma":[0.999271,0.00002172684,0.0001348476,0.00045468,0.00006659958,0.0000511146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001334911,0.002563924,0.1266322,0.001959568,0.002005701,0.000002091466,0.0242791,0.005971822,0.5830627,0.01564854,0.1795199,0.05701957],"study_design_scores_gemma":[0.002268127,0.000486281,0.004697874,0.00002383373,0.00007225131,0.000007749518,0.004149428,0.03270767,0.01503642,0.001072365,0.9389986,0.0004793416],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9224665,0.00344975,0.05947014,0.0002477809,0.0002357391,0.002175329,0.004847759,0.00001930078,0.007087749],"genre_scores_gemma":[0.9379238,0.0006190632,0.058343,0.0002236505,0.0001572542,0.0001700027,0.002360037,0.00003038704,0.0001727836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7594787,"threshold_uncertainty_score":0.35533,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03629197658024201,"score_gpt":0.2953959233612024,"score_spread":0.2591039467809603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}