{"id":"W2132091595","doi":"10.1093/bioinformatics/btv376","title":"GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications","year":2015,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Visualization; Computer science; JSON; JavaScript; Annotation; World Wide Web; Scalable Vector Graphics; Metadata; Web application; Data visualization; Interactive visualization; Genome browser; Genome; Information retrieval; Genomics; Data mining; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003047212,0.00270661,0.001922274,0.004240616,0.001144571,0.003797054,0.003926996,0.001362229,0.1138259],"category_scores_gemma":[0.008638475,0.001964273,0.002379376,0.004138008,0.0006828295,0.004071004,0.004872723,0.004263149,0.05944509],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001062808,"about_ca_system_score_gemma":0.002153998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003047625,"about_ca_topic_score_gemma":0.004226005,"domain_scores_codex":[0.9983782,0.0003093918,0.0001433174,0.0003004705,0.0006981074,0.0001705306],"domain_scores_gemma":[0.995566,0.002147683,0.000350893,0.0007124697,0.0007638707,0.0004591396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006819559,0.0001376917,0.001701951,0.002372472,0.0002713915,0.0006236301,0.000644565,0.002784562,0.01670155,0.008395404,0.8107384,0.1549465],"study_design_scores_gemma":[0.00056221,0.0001533016,0.005309283,0.0008046831,0.000165835,0.001205079,0.0002246738,0.04410363,0.0515637,0.03023148,0.8652207,0.0004554911],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.001764347,0.000666728,0.2976523,0.0006644527,0.0002949962,0.000273007,0.03858912,0.6528196,0.007275387],"genre_scores_gemma":[0.02561153,0.001996214,0.5308617,0.001348404,0.0002733824,0.001713541,0.1153811,0.3041284,0.01868576],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1138259,"threshold_uncertainty_score":0.3807855,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03629197658024201,"score_gpt":0.2953959233612024,"score_spread":0.2591039467809603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}