{"id":"W2132150084","doi":"10.1109/tcbb.2010.66","title":"Rearrangement Phylogeny of Genomes in Contig Form","year":2010,"lang":"en","type":"article","venue":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Contig; Genome; Phylogenetic tree; Phylogenetic network; Phylogenetics; Biology; Computational biology; DNA sequencing; Genetics; Sequence (biology); Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009757534,0.0003667563,0.0004653594,0.001816758,0.0007652945,0.001341833,0.0007948777,0.000556708,0.003243798],"category_scores_gemma":[0.006770601,0.0005300215,0.0008509358,0.00247014,0.0005261625,0.0012242,0.0009118624,0.0007060869,0.0009083603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001031906,"about_ca_system_score_gemma":0.0007299425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005607856,"about_ca_topic_score_gemma":0.006447433,"domain_scores_codex":[0.9993786,0.0002123934,0.00002845459,0.0001956503,0.0001236498,0.00006119083],"domain_scores_gemma":[0.9987847,0.0005021278,0.00015043,0.0002460713,0.0002676978,0.00004910845],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0009450608,0.0001079074,0.07858127,0.000452624,0.0002354625,0.0008042728,0.001882716,0.6010411,0.06004423,0.08544996,0.004893787,0.1655616],"study_design_scores_gemma":[0.00004491406,0.0002564153,0.04036412,0.00009339992,0.00007344928,0.0008894625,0.00066874,0.8404067,0.009102101,0.08348317,0.0245478,0.00006975126],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5925274,0.0005503732,0.3947193,0.0003123238,0.00005346635,0.00007866191,0.002361354,0.002016654,0.007380444],"genre_scores_gemma":[0.744683,0.0006469328,0.2374092,0.000129826,0.00002043438,0.00009733767,0.0115221,0.0008093865,0.004681673],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.005607856,"threshold_uncertainty_score":0.01115042,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01038522133353819,"score_gpt":0.2599526599516471,"score_spread":0.2495674386181089,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}