{"id":"W2132347143","doi":"10.1093/cid/cit287","title":"Next-Generation Whole Genome Sequencing Identifies the Direction of Norovirus Transmission in Linked Patients","year":2013,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Norovirus; Amplicon; Genome; Phylogenetic tree; Outbreak; Virology; Transmission (telecommunications); Whole genome sequencing; DNA sequencing; Polymerase chain reaction; Biology; Medicine; Infection control; Genetics; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003685213,0.0002679737,0.0002153511,0.000592608,0.0003989736,0.0008948581,0.0002281864,0.0006166841,0.0008524071],"category_scores_gemma":[0.001625734,0.0001744833,0.0003019416,0.0005325954,0.000221062,0.0002229123,0.0004505042,0.0006343739,0.0001950382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000268792,"about_ca_system_score_gemma":0.0002208507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001278563,"about_ca_topic_score_gemma":0.001811375,"domain_scores_codex":[0.9997014,0.00007042905,0.0000231344,0.00008857715,0.0000538303,0.00006253221],"domain_scores_gemma":[0.9994005,0.0002033008,0.0002158396,0.00003740524,0.00006845895,0.0000744068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004926499,0.00007130035,0.931608,0.0000673213,0.00009675841,0.001623689,0.000651825,0.001295468,0.04695009,0.0004575932,0.0006443395,0.01604093],"study_design_scores_gemma":[0.00007911933,0.0003790983,0.9532645,0.0001183784,0.0002445928,0.007087488,0.001381464,0.01230186,0.01818532,0.001603075,0.005315903,0.00003929299],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976287,0.0002292786,0.001290133,0.00005802513,0.000008222747,0.00001415357,0.0002913245,0.00001228459,0.000467855],"genre_scores_gemma":[0.9956771,0.000182002,0.003162625,0.0001115012,0.00001146756,0.00001407842,0.0007211662,0.0000148391,0.0001052451],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001278563,"threshold_uncertainty_score":0.002851605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09114073948171672,"score_gpt":0.3656726314553401,"score_spread":0.2745318919736234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}