{"id":"W2132347143","doi":"10.1093/cid/cit287","title":"Next-Generation Whole Genome Sequencing Identifies the Direction of Norovirus Transmission in Linked Patients","year":2013,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Norovirus; Amplicon; Genome; Phylogenetic tree; Outbreak; Virology; Transmission (telecommunications); Whole genome sequencing; DNA sequencing; Polymerase chain reaction; Biology; Medicine; Infection control; Genetics; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003646668,0.0001062403,0.000358032,0.00009419218,0.00008318022,0.0000293656,0.00007205495,0.00009970494,0.0001681148],"category_scores_gemma":[0.001707071,0.00007160494,0.0001951651,0.0001570479,0.0002078106,0.0002126866,0.00003480087,0.00025798,0.00006270532],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008928729,"about_ca_system_score_gemma":0.0000730564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004842282,"about_ca_topic_score_gemma":0.0001370521,"domain_scores_codex":[0.9981652,0.0004622444,0.0007140104,0.0002422544,0.0001701466,0.0002461391],"domain_scores_gemma":[0.9991128,0.0001672671,0.000132785,0.0002002025,0.0001872823,0.0001996468],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000748215,0.0005305611,0.9275885,0.00006506847,0.00004026243,0.000004030545,0.00004391504,0.00009111499,0.03651363,0.000003221111,0.001094896,0.03394996],"study_design_scores_gemma":[0.001277592,0.000879308,0.9947555,0.00007314285,0.00004218803,0.000001859905,0.00003543442,0.002040803,0.0000876963,0.0002173182,0.0005316505,0.00005751824],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977053,0.0004093667,0.0002291204,0.0006143099,0.0002399482,0.0006014074,0.00001455194,0.00003956347,0.0001464562],"genre_scores_gemma":[0.998086,0.0007021333,0.00001774393,0.0005634537,0.0002702599,0.00008545814,0.0001404009,0.00001205381,0.0001225094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06716697,"threshold_uncertainty_score":0.2919964,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09114073948171672,"score_gpt":0.3656726314553401,"score_spread":0.2745318919736234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}